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. 2022 Jun 22;12:10601. doi: 10.1038/s41598-022-14790-x

Figure 3.

Figure 3

nsP4-CHIKV three-dimensional model by AlphaFold. (A) nsP4-CHIKV AlphaFold model colored according to pLDDT. At the top right are shown the pLDDT color scales. (B) Model of nsP4-CHIKV colored according to domain assignment. The N-terminal helixes, finger, palm and thumb domains are colored in purple, dark blue, green and red, respectively. A detailed view of predicted catalytic aspartic residues is presented in the inset. (C) Electrostatic potential projected on the surface charge of nsP4-CHIKV, calculated with APBS. Positive regions are colored in blue and negative regions are in red. (D) ConSurf analysis of nsP4-CHIKV model. The amino acids are colored by their conservation grades using the color-coding bar, with green-through-purple indicating variable-through-conserved.