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. 2022 Jun 15;606(7915):718–724. doi: 10.1038/s41586-022-04800-3

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 3 — a, Post-capture coverage distribution of BSK007 across the Y. pestis CO92 chromosome. Mean coverage was estimated across the genome in 4,000 bp windows. The dotted gray line indicates the mean coverage across the entire genome (0.125-fold). b, Krona plots showing the taxonomic classification of BSK007 reads mapping against all Y. pestis CO92 elements (chromosome NC_003143.1, pMT1 NC_003134.1, pPCP1 NC_003132.1 and pCD1 NC_003131.1). Numbers in brackets next to element designations correspond to the number of assigned reads in MALT. The colours of Krona sectors represent different taxonomic levels and their completeness is proportional to the relative abundance of summarised reads at each corresponding taxonomic node. The shown percentages indicate the species-level (outermost circle) proportion of reads aligned to taxa other than Y. pestis and Y. pseudotuberculosis.