Table 6.
Basic information of studied SNPs.
Gene | Chromosome location | SNPs | SNP ID rs number | Region | Function | MAF in European population |
---|---|---|---|---|---|---|
SOD2 | 6 | c.47 C > T (p.Val16Ala) | rs4880 | Exon | This polymorphism causes a substitution of Val to Ala in codon 16 at position 9 and in consequence, leads to functional modulation of protein; the 16Ala variant with α-helical structure shows normal transportation of the enzyme into the mitochondria, while the 16Val-containing precursor, which has a β-sheet conformation has 30–40% reduced enzymatic activity | C: 0.498 |
CAT | 11 | c.-89 A > T | rs7943316 | 5′ UTR | The T/T genotype of this SNP is associated with a reduction in catalase activity compared to the A/A and A/T genotypes68 | A: 0.349 |
GPX4 | 19 | c.660 T > C (p.Leu220 =) | rs713041 | 3′ UTR | This polymorphism causes the change of the amino acid at position 220 from leucine to leucine (p.Leu220) in a region of the GPX4 corresponding to the 3′-untranslated region (3′-UTR) of the mRNA and alters the protein binding to the 3′-UTR and reporter gene activity, which in turn modulates the ability of the GPX4 3′UTR both to promote GPX4 synthesis and to compete for components of the selenoprotein synthetic machinery, and thus influence the synthesis of a range of selenoproteins. Summarizing, this SNP is involved in the modulation of the GPX4 synthesis by altering the affinity of the selenocysteine insertion machinery for its SECIS element65,69 | T: 0.452 |
NOS1 (nNOS) | 12 | g.117803515 C > T | rs1879417 | Intron | SNPs, which are localised in intron can affect the mRNA/protein splicing process, resulting in the formation of different isoforms of a protein41,42 | C: 0.459 |
NOS2 (iNOS) | 17 | c.1823 C > T (p.Ser608Leu) | rs2297518 | Exon | This polymorphism causes an amino acid substitution from serine to leucine which increases iNOS activity (alters iNOS protein function) and conferees higher NO production based on the A-allele43 | T: 0.198 |