Table 1.
Numbers of SNP loci for the nuclear and mitochondrial genomes within individual clades and between each of the clades and the Clade I reference strain B8441. For SNPs in the “Clade-specific” column, different clades used different reference genomes for SNP calling, as described in the text.
| Reference Feature | Clade-specific | Comparison with Clade I strain B8441 | |
|---|---|---|---|
| Clade I | Nuclear | 4,775 | 4,775 |
| Mitochondrial | 46 | 46 | |
| Clade II | Nuclear | 3,456 | 68,248 |
| Mitochondrial | 0 | 12 | |
| Clade III | Nuclear | 3,038 | 48,825 |
| Mitochondrial | 19 | 21 | |
| Clade IV | Nuclear | 1,427 | 173,958 |
| Mitochondrial | 0 | 28 | |
| Clade V | Nuclear | N/A | 250,369 |
| Mitochondrial | N/A | 60 | |