Table 6.

Signatures of recombination based on mitochondrial and nuclear SNP comparisons.

	Clade I	Clade III	All four clades
Reference genome size (nuclear; mitochondrial, ×10^6 bp)	12.37; 0.028212	12.74; 0.028214	12.37; 0.028212
Sample size	537	514	1,285
Nuclear SNPs; mitochondrial SNPs	4,775; 46	3,038; 19	232,179; 89
Total number of analyzed SNP pairs	219,650	57,722	20,663,931
SNP pairs in PI (% of total pairs)	2,186 (1.0%)	336 (0.58%)	848,648 (4.11%)
SNP pairs in PI that fail to reject LE (% of total pairs that are in PI)	1,337 (61.16%)	95 (28.27%)	323,863 (38.16%)