Table 7.
Details of the 13 clade-shared SNPs and the genes located around them.
| SNP loci | Ref | Alt | Upstream gene | Annotation | Downstream gene | Annotation | |
|---|---|---|---|---|---|---|---|
| Clade-shared SNP region 1 (PEKT02000002.1) | 9130 | G | A | B9J08_000509: 12915-10831 | Has domain(s) with predicted hydrolase activity | B9J08_000508: 8454-6094 | Ortholog(s) have role in negative regulation of TORC1 signaling and cytoplasm localization |
| 9137 | C | T | |||||
| 9157 | T | A | |||||
| 9175 | G | A | |||||
| Clade-shared SNP region 2 (PEKT02000006.1) | 48,506 | T | A | B9J08_002255: 49410-49006 | Protein of unknown function | B9J08_002254: 47801-47169 | Has domain(s) with predicted FMN binding, oxidoreductase activity |
| 48,561 | G | A | |||||
| 48,573 | G | A | |||||
| 48,580 | G | A | |||||
| 48,583 | G | A | |||||
| 48,586 | G | A | |||||
| Clade-shared SNP region 3 (PEKT02000007.1) | 2,433,109 | G | A | B9J08_003771: 2429975-2431693 | Ortholog(s) have unfolded protein binding activity, role in protein folding and chaperonin-containing T-complex localization | B9J08_003772: 2436486-2436992 | Has domain(s) with predicted DNA-binding transcription factor activity, RNA polymerase II-specific, zinc ion binding activity, role in regulation of transcription, DNA-templated and nucleus localization |
| 2,433,112 | C | T | |||||
| 2,433,123 | A | C |