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Example output of per-cell quality control
Example of per-cell QC as output by ArchR.
(A) In Sample 1, a high percentage of nuclei have low TSS enrichment scores and low fragments numbers.
(B and C) In Samples 2 and 3, most of the nuclei have good TSS enrichment scores and fragments numbers. However, further filtering is still needed to remove outliers that are low quality (potential doublets or artifacts).
