Antibodies |
|
4EBP1 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 9644; RRID:AB_2097841 |
4EBP1 (T37/46P) mAb (Rabbit) |
Cell Signaling Technology |
Cat# 2855; RRID:AB_560835 |
AKT1 antibody (Rabbit) |
Cell Signaling Technology |
Cat# 9272; RRID:AB_329827 |
AKT1 (S473P) mAb (Mouse) |
Cell Signaling Technology |
Cat# 4051; RRID:AB_331158 |
AKT1 (T308P) antibody (Rabbit) |
Cell Signaling Technology |
Cat# 9275; RRID:AB_329828 |
AKT2 antibody (Rabbit) |
Cell Signaling Technology |
Cat# 2962; RRID:AB_329872 |
AKT3 antibody (Rabbit) |
Cell Signaling Technology |
Cat# 4059; RRID:AB_2225351 |
Anti-p21 Antibody (F-5) (Mouse) |
Santa Cruz Biotechnology |
Cat# sc-6246; RRID:AB_628073 |
Anti-puromycin antibody (Mouse) |
Millipore |
Cat# MABE343; RRID:AB_2566826 |
BAD mAb (Rabbit) |
Cell Signaling Technology |
Cat# 9239; RRID:AB_2062127 |
BAX mAb (Rabbit) |
Cell Signaling Technology |
Cat# 5023; RRID:AB_10557411 |
Bcl2 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 4223; RRID:AB_1903909 |
β-Actin (13E5) mAb (Rabbit) |
Cell Signaling Technology |
Cat# 4970; RRID:AB_2223172 |
Bim mAb (Rabbit) |
Cell Signaling Technology |
Cat# 2933; RRID:AB_1030947 |
Caspase 3 (Rabbit) |
Cell Signaling Technology |
Cat# 9662; RRID:AB_331439 |
Caspase 8 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 4790; RRID:AB_10545768 |
Cleaved caspase 3 (Rabbit) |
Cell Signaling Technology |
Cat# 9664; RRID:AB_2070042 |
Cleaved caspase 8 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 8592; RRID:AB_10891784 |
Cleaved PARP1 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 5625; RRID:AB_10699459 |
DR5 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 8074; RRID:AB_10950817 |
GAPDH mAb (Rabbit) |
Cell Signaling Technology |
Cat# 8884; RRID:AB_11129865 |
IgG (Rabbit) |
Sigma-Aldrich |
Cat# GENA934, RRID:AB_2722659 |
IgG2a, kappa Isotype Control Antibody (Mouse) |
Biolegend |
Cat# 401502; RRID:AB_2800437 |
mTOR (Rabbit) |
Cell Signaling Technology |
Cat# 2983; RRID:AB_2105622 |
mTOR (S2448P) mAb (Rabbit) |
Cell Signaling Technology |
Cat# 5536; RRID:AB_10691552 |
p53 (Mouse) |
Santa Cruz Biotechnology |
Cat# sc-126; RRID:AB_628082 |
PARP1 mAb (Rabbit) |
Cell Signaling Technology |
Cat# 9532; RRID:AB_659884 |
PP2AC mAb (Rabbit) |
Cell Signaling Technology |
Cat# 2259; RRID:AB_561239 |
PUMA (Rabbit) |
Cell Signaling Technology |
Cat# 98672; RRID:N/A |
|
Chemicals, peptides, and recombinant proteins |
|
10x Tris/glycine buffer |
Bio-Rad |
Cat# 1610734 |
10x Tris/glycine/SDS buffer |
Bio-Rad |
Cat# 1610732 |
5-FU (99% HPLC purified) |
Sigma-Aldrich |
Cat# F6627 |
BCA protein assay kit |
Thermo-Scientific |
Cat# 23225 |
Bolt LDS sample buffer (4X) |
Life Technologies |
Cat# B0007 |
Cell Dissociation Buffer, enzyme-free |
Thermo-Scientific |
Cat#13151014 |
Cycloheximide |
Sigma-Aldrich |
Cat# 01810 |
Halt Protease and Phosphatase inhibitor cocktail |
Thermo-Scientific |
Cat# 78440 |
Immobilon-P (PVDF) membrane |
Merck Millipore |
Cat# IPVH00010 |
Mini-PROTEAN TGX precast gel 4–15% |
Bio-Rad |
Cat# 456–1085 |
Muse Caspase-3/7 kitEMD |
Millipore |
Cat# MCH100108 |
MTT (3-(4,5-dimethylthiazol-2yl-)-2,5-diphenyl tetrazolium bromide) |
Fisher Scientific |
Cat# M6494 |
Oxaliplatin |
TOCRIS Biosciences |
Cat# 2623 |
PBS with 0.5% Tween 20 pH 7.4 |
Sigma-Aldrich |
Cat# P3563 |
Phosphate Buffer Saline |
Sigma-Aldrich |
Cat# P-5368 |
Pierce RIPA buffer |
Thermo-Scientific |
Cat# 89901 |
Protein A/G PLUS-Agarose |
Santa Cruz Biotechnology |
Cat# sc-2003 |
Puromycin dihydrochloride |
Santa Cruz Biotechnology |
Cat# sc-108071A |
rPP2A-Cα (recombinant) |
Cayman Chemical |
Cat# 10011237 |
Threonine phosphopeptide (KRpTIRR) |
MilliporeSigma |
Cat# 12-219 |
TRAIL/Apo2l |
PreproTech, Inc. |
Cat# 310-04 |
TRIZOL reagent |
Life Technologies |
Cat# 15596 |
Trypsin/EDTA (0.05%) |
Thermo-Scientific |
Cat# 25300054 |
|
Deposited data |
|
RNAseq data of FOLFOX-resistant HT29 cells |
This paper: https://doi.org/10.5281/zenodo.6565046
|
Zenoda data: https://zenodo.org/record/6565046#.YobdkKjMJPY
|
TCGA data were for CRC cells |
This paper: https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga/studied-cancers/colorectal
|
Cancer Genome Atlas: https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga/studied-cancers/colorectal
|
Gene expression data for FOLFOX-resistant and non-resistant patient |
This paper: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72970
|
NCBI Gene expression Omnibus (GEO) under GSE72970 accession: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72970
|
|
Experimental models: Cell lines |
|
FHC |
ATCC |
N/A |
FOLFOX-resistant HCT116 |
Adhip P. Majumdar, John D. Dingell VA Medical Centre, Detroit, MI |
N/A |
FOLFOX-resistant HT29 |
Adhip P. Majumdar, John D. Dingell VA Medical Centre, Detroit, MI |
N/A |
HCT116 |
ATCC |
N/A |
HCT116-p21−/− cells |
Bert Vogelstein, Johns Hopkins Medical School, Baltimore, MD |
N/A |
HCT116-p21−/−/H6p21 cells |
Brian K. Law, University of Florida, Gainesville, FL |
N/A |
HT-29 |
ATCC |
N/A |
LoVo |
ATCC |
N/A |
LS174T |
ATCC |
N/A |
RKO |
ATCC |
N/A |
SW480 |
ATCC |
N/A |
|
Oligonucleotides |
|
actin B-F (GCTCCTCCTGAGCGCAAGTACTC |
Sigma-Aldrich |
N/A |
actin B-R (GTGGACAGCGAGGCCAGGAT) |
Sigma-Aldrich |
N/A |
p21-F- (CCGCGACTGTGATGCGCTAATG) |
Sigma-Aldrich |
N/A |
p21-R (CTCGGTGACAAAGTCGAAGTTC) |
Sigma-Aldrich |
N/A |
TP53-F (CACATGACGGAGGTTGTGAG) |
Sigma-Aldrich |
N/A |
TP53-R (ACACGCAAATTTCCTTCCAC) |
Sigma-Aldrich |
N/A |
|
Software and algorithms |
|
CalcuSyn |
Biosoft |
http://www.biosoft.com/w/calcusyn.htm |
GraphPad Prism v8.0 |
Dotmatics |
N/A |
ImageJ |
NIH Image |
N/A |
Sigma-Plot 9 |
Systat Software, Inc. |
N/A |