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. 2022 Jun 9;25(7):104563. doi: 10.1016/j.isci.2022.104563
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains

E. coli (BL21(DE3)) Merck Cat#69450
E. coli (BL21(DE3)) Bio-Rad Cat#156-3003
E. coli (JM109(DE3)) Promega Cat#P9801
E. coli (BL21-CodonPlus (DE3)-RIL) Agilent Cat#230245
E. coli (DH5α) Takara Cat#9057

Chemicals, peptides, and recombinant proteins

Recombinant human core histone H2A Machida et al. (2018) N/A
Recombinant human core histone H2B Machida et al. (2018) N/A
Recombinant human core histone H3.1 This paper N/A
Recombinant human core histone H4 Machida et al. (2018) N/A
Recombinant human p300(BRPHΔAILZ) Zhang et al. (2018) N/A
Recombinant human p300(BRPHΔAILZ) R1137A This paper N/A
Recombinant human p300(BRPHΔAILZ) BPD mutant (K1456A/K1459A/K1461A/R1462A) This paper N/A
Thrombin Cytiva Cat#27084601
Enterokinase, light chain New England Biolabs Cat#P8070L
Pre-Scission protease Zhang et al. (2018) N/A
Glutaraldehyde 25% solution, practical grade Electron Microscopy Sciences Cat# 16220-P
SYBR Gold Thermo Fisher Scientific Cat#S11494
DSS-H12/D12 Creative Molecules Inc. Cat#001S
Trypsin/Lys-C Mix, Mass Spec Grade Promega Cat#V5072

Deposited data

p300(BRPHΔAILZ)-NCP complex I This paper EMDB: EMD-32373
PDB: 7W9V
p300(BRPHΔAILZ)-NCP complex II This paper EMDB: EMD-32374
p300(BRPHΔAILZ)-NCP complex III This paper EMDB: EMD-32375
p300(BRPHΔAILZ)-NCP complex IV This paper EMDB: EMD-32376
Crystal structure of nucleosome Vasudevan et al. (2010) PDB: 3LZ0
Crystal structure of the p300 acetyltransferase catalytic core Kaczmarska et al. (2017) PDB: 5LKU
Crosslinking mass spectrometry data This paper jPOST: JPST001584
PXID: PXD033804
Mendeley Data This paper https://doi.org/10.17632/dgcnhyz779.1

Recombinant DNA

pET-15b-H2A Machida et al. (2018) N/A
pET-15b-H2B Machida et al. (2018) N/A
pET-15b-H3.1 containing the enterokinase cleavage site This paper N/A
pET-15b-H4 Machida et al. (2018) N/A
pGEX-6P-1-p300(BRPHΔAILZ) Zhang et al. (2018) N/A
pGEX-6P-1-p300(BRPHΔAILZ) R1137A This paper N/A
pGEX-6P-1-p300(BRPHΔAILZ) BPD mutant (K1456A/K1459A/K1461A/R1462A) This paper N/A
pGEM-T Easy-145 bp Widom 601 DNA Arimura et al. (2013) N/A

Software and algorithms

SerialEM ver.3 Mastronarde (2005) https://bio3d.colorado.edu/SerialEM/
Relion 3.1.2 Zivanov et al. (2018) https://www3.mrc-lmb.cam.ac.uk/relion//index.php/Main_Page
MOTIONCOR2 1.4.0 Zheng et al. (2017) https://emcore.ucsf.edu/ucsf-software
CTFFIND 4.1.14 Rohou and Grigorieff (2015) http://grigoriefflab.janelia.org/ctf
UCSF ChimeraX-1.2.5 Goddard et al. (2018) https://www.cgl.ucsf.edu/chimerax/
COOT 0.9.5 Emsley et al. (2010) https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Phenix 1.19.2 Liebschner et al. (2019) http://www.phenix-online.org
ISOLDE 1.2.2 Croll (2018) https://isolde.cimr.cam.ac.uk/what-isolde/
MolProbity 4.5.1 Williams et al. (2018) http://molprobity.biochem.duke.edu
xQuest/xProphet 2.1.3 Leitner et al. (2014) https://gitlab.ethz.ch/leitner_lab/xquest_xprophet
ImageJ 1.52a Schneider et al. (2012) https://imagej.nih.gov/ij/

Other

Ni-NTA agarose beads QIAGEN Cat#30250
Pierce Glutathione Agarose Thermo Fisher Scientific Cat#16101
Mono S HR 16/10 column Cytiva Cat#17050701
HiTrap Q HP anion exchange column Cytiva Cat#17115401
HiLoad 16/600 Superdex 75 pg column Cytiva Cat#28989333
HiLoad 16/600 Superdex 200 pg column Cytiva Cat#28989335
Superdex 30 Increase 3.2/300 column Cytiva Cat#29219758
PD-10 column Cytiva Cat#17085101
Pierce C18 Tips Thermo Fisher Scientific Cat# 87784
C18 NANO HPLC CAPILLARY COLUMN Nikkyo Technos Co., Ltd. Cat# NTCC-360/75-3-125
Amicon Ultra-4 centrifugal filter unit (30,000 MWCO) Merck Cat#UFC803096
Amicon Ultra-2 centrifugal filter unit (30,000 MWCO) Merck Cat#UFC203024
Peristaltic pump ATTO Corporation Cat#1221200
Model 491 Prep Cell Bio-Rad Cat#1702928
Q5 Site-Directed Mutagenesis Kit New England Biolabs Cat#E0554S
QuikChange Lightning Site-Directed Mutagenesis Kit Agilent Cat#210518
SW 41 Ti Swinging-Bucket Rotor Beckman Coulter Cat#331362
Quantifoil R1.2/1.3 200-mesh Cu Quantifoil Cat#M2955C-1
Vitrobot Mark IV Thermo Fisher Scientific
Krios G3i microscope Thermo Fisher Scientific
UltiMate 3000 UHPLC system Thermo Fisher Scientific
Orbitrap Fusion Tribrid mass spectrometer Thermo Fisher Scientific