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. 2022 May 18;298(7):102046. doi: 10.1016/j.jbc.2022.102046

Table 1.

DNA-binding affinities of WT S. pneumoniae SifR for duplexes harboring DNA O/P sequencesa

Locus tag or gene name O/P Ka (×108) (M−1)b
catE (spd_0072) WT: 1.0 (±0.2); C84S: 4.8 (±1.5)
ywnB (spd_1440) 3.2 (±0.4)
yhdA (spd_1375) 0.23 (±0.04)
fre (spd_0527) 0.25 (±0.05)
trxB (spd_1275) 0.13 (±0.04)
a

Sequence of the core operator regions shown in Figure 4A (see Table S4 for complete sequences of the dsDNAs used here), with DNA-binding data shown in Figure 4.

b

Upper limit for this competition assay under these conditions is 0.1 × 108 M−1. Conditions: 25 mM Tris–HCl, 150 mM NaCl, pH 7.4, 25.0 °C.