Table 1.
DNA-binding affinities of WT S. pneumoniae SifR for duplexes harboring DNA O/P sequencesa
| Locus tag or gene name O/P | Ka (×108) (M−1)b |
|---|---|
| catE (spd_0072) | WT: 1.0 (±0.2); C84S: 4.8 (±1.5) |
| ywnB (spd_1440) | 3.2 (±0.4) |
| yhdA (spd_1375) | 0.23 (±0.04) |
| fre (spd_0527) | 0.25 (±0.05) |
| trxB (spd_1275) | 0.13 (±0.04) |
Sequence of the core operator regions shown in Figure 4A (see Table S4 for complete sequences of the dsDNAs used here), with DNA-binding data shown in Figure 4.
Upper limit for this competition assay under these conditions is 0.1 × 108 M−1. Conditions: 25 mM Tris–HCl, 150 mM NaCl, pH 7.4, 25.0 °C.