TABLE 1.
groEL and nheB based primer sequences used for establishing the LAMP assay.
Primer | Sequence 5′→3′ | Region* |
groEL: Acc.-No.: NC_004722 (region: 257826…259460) | ||
F3 | GAAGAAGCACGTCGTTCG | 25–42 |
B3 | TTTTGCTAGCAACTTCTGC | 220–238 |
FIP (F1c + B2) | AGTGGTGAACCAAATTTTTTCTCAA- ACTCTTGCAAACGCAGTA |
116–140; 61–78 |
BIP (B1c + B2) | AATGATGGTGTAACAATCGCAAAAG- CTAATTTCGCACCCATGTT |
148–172; 199–217 |
LF | TGGTCCAAGCGTAACTTT | 79–96 |
LB | TCGAATTAGAAGATGCATTCG | 176–196 |
nheB: Acc.-No.: NC_004722 (region 1766446…1767654) | ||
F3 | CTATTATGATACTTTAGTTGCTGC | 423–446 |
B3 | CGTTGTAATTTGATTTTGCAGAAG | 649–672 |
FIP (F1c + B2) | CTGATCCACTTGCGCTTTATTTTCA-TAAAGCGACTCTTACGAAAGG | 510–534; 462–482 |
BIP (B1c + B2) | CCGAAATAAAATGACTTCGGATACG-TCCTGCATCTTGACTAGC | 558–582; 625–642 |
LF | CTACTTGATAATCTTGTTAAG | 483–503 |
LB | CAAAACTTCAAGGGTGAT | 583–600 |
*In chosen Sequence. Bold values for highlighting the genname.