TABLE 5.
Genes responsible for nitrogen, phosphorous, and potassium assimilation identified in the strain YB-04 genome.
Function | Gene | UniProt accession No. | Description | Best hit in YB-04 | Identity |
Phosphate assimilation | phoA | P19406 | Alkaline phosphatase 4 | orf00986 | 99.35% |
phoR | P23545 | Alkaline phosphatase synthesis sensor protein PhoR | orf03027 | 99.48% | |
phoP | P13792 | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP | orf03028 | 99.58% | |
phoD | P42251 | Alkaline phosphatase D | orf00275 | 99.49% | |
Phosphate transport | pstS | P46338 | Phosphate-binding protein | orf02500 | 99.67% |
pstC | A0A6M4JLF7 | Phosphate transport system permease protein | orf02499 | 99.35% | |
pstB1 | P46342 | Phosphate import ATP-binding protein PstB 1 | orf02496 | 99.62% | |
pstB2 | P46341 | Phosphate import ATP-binding protein PstB 2 | orf02497 | 99.63% | |
pstA | A0A6M3ZE53 | Phosphate transport system permease protein | orf02498 | 100.00% | |
Nitrate/nitrite assimilation | nasD | P42435 | Nitrite reductase | orf00344 | 99.26% |
nasE | P42436 | Assimilatory nitrite reductase [NAD(P)H] small subunit | orf00343 | 100.00% | |
nasA | P42432 | Nitrate transporter | orf00347 | 99.50% | |
nasC | P42434 | Assimilatory nitrate reductase catalytic subunit | orf00345 | 98.03% | |
nasB | P42433 | Assimilatory nitrate reductase electron transfer subunit | orf00346 | 97.54% | |
nasF | P42437 | Uroporphyrinogen-III C-methyltransferase | orf00342 | 97.30% | |
Potassium assimilation | ktrC | P39760 | Ktr system potassium uptake protein C | orf01561 | 100.00% |
ykqA | P39759 | Putative gamma-glutamylcyclotransferase YkqA | orf01560 | 96.75% | |
ktrD | O31658 | Ktr system potassium uptake protein D | orf01445 | 100.00% | |
yugO | Q795M8 | Putative potassium channel protein YugO | orf03270 | 100.00% | |
ktrB | O32081 | Ktr system potassium uptake protein B | orf03241 | 99.10% | |
ktrA | O32080 | Ktr system potassium uptake protein A | orf03240 | 99.10% |