Table 3.
Performance evaluation results of BVMHC model on non-human species.
Alleles | Accuracy | AUC | F1 | MCC | Specificity | Sensitivity | Precision | AUPR | |
---|---|---|---|---|---|---|---|---|---|
Class I | H-2-Db | 0.829 | 0.855 | 0.573 | 0.466 | 0.897 | 0.564 | 0.583 | 0.602 |
H-2-Dd | 0.924 | 0.870 | 0.696 | 0.660 | 0.975 | 0.615 | 0.800 | 0.751 | |
H-2-Ld | 0.814 | 0.852 | 0.698 | 0.564 | 0.875 | 0.682 | 0.714 | 0.779 | |
Mamu-A07 | 0.905 | 0.949 | 0.854 | 0.783 | 0.929 | 0.854 | 0.854 | 0.902 | |
Mamu-A11 | 0.822 | 0.899 | 0.726 | 0.595 | 0.880 | 0.707 | 0.747 | 0.805 | |
Mamu-A2201 | 0.908 | 0.957 | 0.854 | 0.789 | 0.955 | 0.814 | 0.897 | 0.943 | |
Mamu-B01 | 0.942 | 0.865 | 0.667 | 0.654 | 0.988 | 0.550 | 0.846 | 0.767 | |
Mamu-B03 | 0.857 | 0.921 | 0.769 | 0.666 | 0.903 | 0.758 | 0.781 | 0.843 | |
Mamu-B08 | 0.852 | 0.911 | 0.690 | 0.600 | 0.875 | 0.769 | 0.625 | 0.776 | |
Mamu-B17 | 0.822 | 0.882 | 0.717 | 0.592 | 0.838 | 0.782 | 0.662 | 0.710 | |
Mamu-B52 | 0.827 | 0.870 | 0.870 | 0.617 | 0.677 | 0.912 | 0.832 | 0.884 | |
Patr-A0101 | 0.816 | 0.838 | 0.619 | 0.520 | 0.935 | 0.520 | 0.765 | 0.688 | |
Patr-A0401 | 0.881 | 0.904 | 0.636 | 0.565 | 0.929 | 0.636 | 0.636 | 0.616 | |
Patr-A0701 | 0.825 | 0.820 | 0.545 | 0.438 | 0.901 | 0.522 | 0.571 | 0.682 | |
Patr-B0101 | 0.911 | 0.947 | 0.794 | 0.759 | 0.991 | 0.675 | 0.964 | 0.894 | |
Patr-B1301 | 0.875 | 0.917 | 0.903 | 0.727 | 0.824 | 0.903 | 0.903 | 0.951 | |
RT1A | 0.893 | 0.923 | 0.400 | 0.352 | 0.923 | 0.500 | 0.333 | 0.667 | |
Class II | H-2-IAb | 0.826 | 0.797 | 0.489 | 0.394 | 0.925 | 0.423 | 0.579 | 0.627 |
H-2-IAd | 0.810 | 0.810 | 0.571 | 0.452 | 0.896 | 0.533 | 0.615 | 0.632 |