Table 2.

Inter-specific genetic divergence and differentiation for the three genetic datasets: Cox1 mitochondrial gene (599 bp), ddRAD-seq SNPs (60,084 SNPs), and nuclear encoding RNAseq (1,186,131 bp). d_A: net divergence; d_XY: absolute divergence; F_ST: genetic differentiation; d_N: rate of non-synonymous substitutions; d_S: rate of synonymous substitutions.

	d A	d XY	F ST	dN/dS	d N	d S
Mitochondrial (Cox1; 599 bp; 722 ind)
A. kojimai/A. boucheti	0.123	0.126	0.974	0.006	0.005	0.784
A. kojimai/A. strummeri	0.086	0.091	0.961	0.015	0.007	0.468
A. boucheti/A. strummeri	0.118	0.124	0.967	0.003	0.002	0.793
Transcriptomes (RNAseq; 1,186,131 bp; 7 ind)
A. kojimai/A. boucheti	0.028	0.031		0.133	0.013	0.097
A. kojimai/A. strummeri	0.016	0.020		0.124	0.008	0.062
A. boucheti/A. strummeri	0.027	0.031		0.134	0.013	0.096
Genome (ddRAD-seq; 60,084 SNPs; 498 ind)
A. kojimai/A. boucheti	0.031	0.031	0.922
A. kojimai/A. strummeri	0.018	0.018	0.842
A. boucheti/A. strummeri	0.031	0.031	0.917