Table 1.
List of RAR and RXR binding sites found in the HOXA9 promoter.
| Transcription Factor | Start Position * | End Position | TRE ** Sequence |
|---|---|---|---|
| RXR-alpha | −1454 | −1448 | TTTACCC |
| RXR-alpha | −1442 | −1436 | GGGTGAG |
| RXR-alpha | −1380 | −1374 | TTTACCC |
| RXR-alpha | −1168 | −1162 | GGGTCTC |
| RXR-alpha | −1021 | −1015 | GGGTCGC |
| RXR-alpha | −945 | −939 | GGGTCGA |
| RXR-alpha | −843 | −837 | GGGTCCT |
| RXR-alpha | −816 | −810 | GGGTTGC |
| RXR-alpha | −787 | −781 | GGGTAGC |
| RXR-alpha | −770 | −764 | TACACCC |
| RXR-alpha | −654 | −648 | GGGTAAA |
| RXR-alpha | −346 | −340 | GGGACCC |
| RXR-alpha | −205 | −199 | CAAACCC |
| PPAR-alpha:RXR-alpha | −1413 | −1403 | CAGGCCCAGGA |
| PPAR-alpha:RXR-alpha | −1025 | −1015 | GGCTGGGTCGC |
| RAR-beta | −817 | −808 | AGGGTTGCCC |
| RAR-beta | −207 | −198 | AACAAACCCC |
| RAR-beta:RXR-alpha | −42 | −31 | GGGCGCCGGCAA |
* The first base pair of the transcribed gene is position 0. ** TRE = transcriptional regulatory element.