TABLE 2.
Summary of primers
| Primer | Sequence (5′-3′)a | Location (nucleotides) | Comment |
|---|---|---|---|
| WG-1 | CCYTCRCGRCCGCCCCA | 1913–1897b | L. lactis B-4449 xylA PCR |
| NH-1 | ACNAARACNAARAAYATGTTY | 1378–1399b | L. lactis B-4449 xylA PCR |
| 5 | TGATGCCAATCTTGG | 2220–2234b | L. lactis B-4449 xylA inverse PCR |
| 7 | TCTGGTAGGTCTTCTCCTA | ∼1.6 kg upstream of xylA | L. lactis B-4449 xylA inverse PCR |
| BFX | CGGGATCCATGTTCATTCTCTCCTAATCAC | 1171–1192c | xylA PCR and Northern primer |
| HRX | CCCAAGCTTGGTTCCTAAGT | 2702–2691c | xylA PCR and Nothern primer |
| BFX-rev | GTGATTAGGAGAGAATGAACAT | 1192–1171c | xylR-xylB inverse PCR |
| HRX-rev | TTAGGAATTGACTTAGGAACC | 2681–2702c | xylR-xylB inverse PCR |
| 210ip820-rev | TGAGTAACAAGCACCCGGAACC | 3544–3523c | xylB inverse PCR |
| R210xb-rev | TAGAAGCGGTCACTAAAGC | 4011–4029c | xylB inverse PCR |
| Ip412-rev | AGAAATTGCTGGATAAACTGG | 2964–2945c | xylB inverse PCR |
| M13-40 | GTTTTCCCAGTCACGAC | NAd | Vector sequencing primer |
| M13rev(ht) | GCTTTAGTGACCGCTTCTA | NA | Vector sequencing primer |
R = A or G; Y = C or T; H = A or C or T; N = any nucleotide.
Nubmering corresponds to L. lactis B-4449 xyl-xyn operon (including sequence upstream of xylR); GenBank accession no. AF092042.
Numbering corresponds to L. lactis IO-1 xyl-xyn operon (including upstream sequence); GenBank accession no. AF092041.
NA, not available.