Table 2.
GenBank and voucher/culture collection accession numbers of Uromyces species included in the phylogenetic study.
Taxa | Isolate Name | GenBank Accession No. | References | |
---|---|---|---|---|
ITS | LSU | |||
Uromyces acetosae | DAOM 159824 | HQ317557 | HQ317557 | [39] |
Uromyces acuminatus | DUCC506 | ‒ | KC570451 | [40] |
CT-V080623-3 | GU109282 | ‒ | [41] | |
Uromyces aemulus | HSZ0345 | AF511081 | AF511081 | [42] |
Uromyces aloes | 2020-6-28-0005 | MT136509 | ‒ | Unpublished |
WM 3290 | ‒ | DQ917740 | [43] | |
Uromyces alopecuri | DAOM 234714 | HM131363 | HM131363 | [44] |
Uromyces alyxiae | BPI 871816 | ‒ | KY764186 | Unpublished |
Uromyces anthyllidis | EB19 | FJ468411 | ‒ | [45] |
Uromyces ari-triphylli | BPI 871111 | DQ354529 | DQ354528 | [12] |
Uromyces betae | BPI910289 | KY764187 | ‒ | Unpublished |
Uromyces beticola | PDD:101534 | KX985757 | KX985757 | [46] |
Uromyces bidenticola | ZP-R1366 | ‒ | MK518671 | Unpublished |
Uromyces caricis-sempervirentis | GZU 10-94 | ‒ | DQ917714 | Unpublished |
Uromyces chenopodii-fruticosi | K(M)107793 | ‒ | MT053261 | [47] |
Uromyces ciceris-arietini | BPI 879192 | FJ468398 | GU058030 | [48] |
‒ | GQ914998 | ‒ | [49] | |
Uromyces clignyi | DAOM 192217 | HM131364 | ‒ | [44] |
Uromyces coloradensis | DAOM 181557 | HQ317565 | ‒ | [39] |
DAOM187619 | HQ317564 | ‒ | [39] | |
Uromyces coronatus | DAOM 32991 | HM131365 | ‒ | [44] |
BPI 910293 | ‒ | KY764191 | Unpublished | |
Uromyces dactylidis | PRC692 | KM667950 | ‒ | [50] |
TUB 14997 | ‒ | DQ917745 | [43] | |
Uromyces dianthi | BPI 141961 | ‒ | KY764192 | Unpublished |
Uromyces dolicholi | DAOM 116149 | HQ317563 | ‒ | [39] |
Uromyces durus | IBAR11149 | LC203758 | ‒ | [51] |
Uromyces eragrostidis | BPI004474 | ‒ | KY575113 | Unpublished |
Uromyces erythronii | DE-soo-43285 | MH205917 | MH205917 | [52] |
Uromyces euphorbiae | F425 | AF180158 | ‒ | [53] |
BPI 863673 | ‒ | KT750330 | Unpublished | |
Uromyces ficariae | WM 1398 | ‒ | AF426204 | [33] |
Uromyces gageae | HMJAU:8558 | MG742207 | MG742207 | [54] |
U242 | DQ250133 | DQ250133 | [55] | |
Uromyces geranii | BRIP 60100 | ‒ | KX999898 | [56] |
Uromyces gladioli | ‒ | ‒ | GU936633 | [57] |
Uromyces graminicola | URO 3 | KR264705 | ‒ | [58] |
Uromyces halstedii | U1673 | MG905913 | ‒ | [59] |
Uromyces hawksworthii | UB:22382 | KR821137 | ‒ | [60] |
UB:22875 | KR821138 | ‒ | ||
UB:22875 | ‒ | NG059990 | ||
Uromyces hedysari-obscuri | DAOM 189699 | HQ317573 | ‒ | [39] |
DAOM 223015 | ‒ | HQ317572 | ||
Uromyces ixiae | RSA191 | ‒ | DQ917738 | [43] |
RSA8 | ‒ | DQ917739 | Unpublished | |
Uromyces japonicus | TNS:F:61987 | LC203759 | LC203759 | [51] |
Uromyces jonesii | DAOM 137431 | HQ317559 | HQ317559 | Unpublished |
Uromyces junci | GZU 11-98 | ‒ | AF426203 | [33] |
Uromyces klotzschianus | BA91 | MF044015 | ‒ | [61] |
BA92 | MF044016 | ‒ | ||
BA93 | ‒ | MF044017 | ||
Uromyces lespedezae-procumbentis | BPI 910294 | KY764193 | ‒ | Unpublished |
Uromyces lomandracearum | BRIP:59022 | ‒ | KM249862 | [62] |
Uromyces lupini | DAOM 233961 | HQ317570 | HQ317570 | [39] |
Uromyces magnusii | PDD:94487 | KX985755 | ‒ | [46] |
Uromyces minor | MVAP50000151 | MK045314 | ‒ | Unpublished |
Uromyces musae | DAOM 192221 | HQ317556 | ‒ | [39] |
Uromyces muscari | DAOM 75626 | HQ317552 | HQ317552 | [39] |
Uromyces neotropicalis | MCA2533 | ‒ | DQ021885 | [63] |
Uromyces novissimus | R20 | ‒ | EU851147 | [57] |
Uromyces orientalis | BRIP 60934 | KX999899 | ‒ | [56] |
Uromyces otaviensis | NA 305 | ‒ | DQ917715 | [43] |
Uromyces peglerae | BPI 843311 | ‒ | KY575116 | Unpublished |
Uromyces pisi-sativa | ‒ | DQ521591 | ‒ | Unpublished |
BRIP 60151 | ‒ | KX999900 | [56] | |
Uromyces plumbarius | 070P06138145 | KP313731 | ‒ | [64] |
RK44 | ‒ | JQ312671 | [65] | |
Uromyces polygoni-avicularis | DAOM 181565 | ‒ | HQ317558 | [39] |
Uromyces probus | BPI 893209 | KT267172 | ‒ | [66] |
Uromyces rebeccae | FDWSRU 15-022 | MN386999 | MN386999 | [47] |
Uromyces reichertii | 6421 | AF511084 | AF511084 | [42] |
Uromyces rumicis | PDD:93529 | KX985763 | ‒ | [46] |
BPI 910298 | ‒ | KY764197 | Unpublished | |
Uromyces salsolae | FDWSRU 05-090 | MN381162 | MN381162 | [47] |
Uromyces scaevolae | BRIP:57517 | KF690686 | KF690686 | [67] |
Uromyces scutellatus | E328 | AF180200 | AF180200 | [53] |
Uromyces setariae-italicae | BPI 863744 | KY575068 | ‒ | Unpublished |
Uromyces setariae-italicae | BPI 863750 | ‒ | KY575069 | Unpublished |
Uromyces socius | BPI 910302 | ‒ | KY764200 | Unpublished |
Uromyces sporobolicola | DAOM 114294 | HQ317560 | HQ317560 | [39] |
Uromyces striatus | U-675 | HQ412651 | ‒ | [68] |
DAOM 240966 | HQ317512 | ‒ | [39] | |
Uromyces striolatus | E405 | AF180201 | AF180201 | [53] |
Uromyces strobilanthis | BPI 893253 | ‒ | KY798375 | Unpublished |
Uromyces tenuicutis | BRIP 60012 | ‒ | KX999904 | [56] |
Uromyces transversalis | NZ11 PDD-99990 | JQ777025 | ‒ | Unpublished |
CA1124 | JQ776984 | ‒ | Unpublished | |
PUR:N16743 | ‒ | MF374730 | [69] | |
Uromyces trifolii | ‒ | ‒ | GU936634 | [57] |
Uromyces trifolii-repentis | R217 | EU014070 | ‒ | [70] |
BRIP 57653 | ‒ | KX999905 | [56] | |
Uromyces viciae-fabae | TSH_R6320 | AB115665 | ‒ | [71] |
WM 1365 | ‒ | AF426199 | [33] | |
Uromyces vignae | H92019 | AB115731 | ‒ | [72] |
H50721 | AB115726 | ‒ | ||
BRIP 60213 | ‒ | KX999906 | [56] | |
BRIP 60213 | ‒ | KX999906 | ||
Uromyces wedeliae | BRIP 60000 | ‒ | KX999907 | [56] |