Table 1.
Comparison of SFynMstLFR and other published Spodoptera frugiperda genome assemblies.
| Assembly | ASM221328v1 | SF_CORN_1 | Sf-RVN WGS | ASM75363v2 | SFynMstLFR |
|---|---|---|---|---|---|
| Bioproject | PRJNA380964 | PRJEB13110 | PRJNA344686 | PRJNA257248 | – |
| Assembly approach | Canu | – | CLC NGS Cell | SOAPdenovo | supernovo |
| Sequencing platform | PacBio | – | Illumina-HiSeq 2500 | Illumina/454/SOLiD | MGISEQ-2000 |
| Number of contigs | 2,844 | 50,014 | 89,958 | 119,777 | 29,584 |
| Contig N50 (bp) | 516,067 | 21,390 | 10,170 | 6,276 | 91,970 |
| Number of scaffolds | 2,396 | 41,562 | 66,318 | 37,235 | 31 + 21809 |
| Scaffold N50 (bp) | 601,127 | 52,317 | 12,379 | 53,779 | 14,162,803 |
| Total gap length (bp) | 890,870 | 11,379,136 | 2,171,005 | 27,684,486 | 37,953,553 |
| Total bases (bp) | 514,225,903 | 436,269,483 | 391,647,540 | 358,047,567 | 543,659,128 |
| Ungapped bases (bp) | 513,335,033 | 424,890,347 | 389,476,535 | 330,363,081 | 505,705,575 |