TABLE 1.
Chromosome | Plasmid | |
Genome completeness (%)a | 99.39 | N/A |
Est. contamination (%)a | 0.15 | N/A |
Qualityb | ||
# contigs | 1 | 1 |
Largest contig (bps) | 4,267,812 | 127,662 |
Total length (bps) | 4,267,812 | 127,662 |
GC (%) | 63.87 | 59.98 |
# Mismatches (N characters) | 0 | 0 |
Featuresc | ||
CDS | 4,014 | 125 |
With assigned function | 3,470 | 95 |
Hypothetical | 544 | 30 |
tRNAs | 52d | 0 |
rRNA operons | 3 | 0 |
ncRNA | 3 | 0 |
CRISPR arrays | 0 | 0 |
Pseudogenes | 72 | 18 |
Signal Peptidese | ||
Genes with Sec/SPI signal peptidesf | 383 | 7 |
Genes with Sec/SPII signal peptidesg | 89 | 2 |
Genes with Tat/SPI signal peptidesh | 72 | 1 |
aDetermined with CheckM v1.0.18 (Parks et al., 2015).
bDetermined with QUAST v4.4 (Gurevich et al., 2013).
cDetermined with the NCBI Prokaryotic Genome Annotation Pipeline (Tatusova et al., 2016; Haft et al., 2018).
dComprises all 20 amino acids.
eDetermined with SignalP 5.0 (Almagro Armenteros et al., 2019).
fSec/SPI denotes signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
gSec/SPII denotes lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
hTat/SPI denotes Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).