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. 2022 Jun 10;13:909824. doi: 10.3389/fmicb.2022.909824

TABLE 1.

Genome assembly and quality statistics for Thioclava electrotropha ElOx9T.

Chromosome Plasmid
Genome completeness (%)a 99.39 N/A
Est. contamination (%)a 0.15 N/A
Qualityb
# contigs 1 1
Largest contig (bps) 4,267,812 127,662
Total length (bps) 4,267,812 127,662
GC (%) 63.87 59.98
# Mismatches (N characters) 0 0
Featuresc
CDS 4,014 125
With assigned function 3,470 95
Hypothetical 544 30
tRNAs 52d 0
rRNA operons 3 0
ncRNA 3 0
CRISPR arrays 0 0
Pseudogenes 72 18
Signal Peptidese
Genes with Sec/SPI signal peptidesf 383 7
Genes with Sec/SPII signal peptidesg 89 2
Genes with Tat/SPI signal peptidesh 72 1

aDetermined with CheckM v1.0.18 (Parks et al., 2015).

bDetermined with QUAST v4.4 (Gurevich et al., 2013).

cDetermined with the NCBI Prokaryotic Genome Annotation Pipeline (Tatusova et al., 2016; Haft et al., 2018).

dComprises all 20 amino acids.

eDetermined with SignalP 5.0 (Almagro Armenteros et al., 2019).

fSec/SPI denotes signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

gSec/SPII denotes lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

hTat/SPI denotes Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).