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. 2022 Jun 10;13:804627. doi: 10.3389/fmicb.2022.804627

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Copyright © 2022 Rebelo, Bortolaia, Leekitcharoenphon, Hansen, Nielsen, Ellermann-Eriksen, Kemp, Røder, Frimodt-Møller, Søndergaard, Coia, Østergaard, Westh and Aarestrup.

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Percentage and number of genotype–phenotype concordances and discordances observed for all bacteria analyzed in this study, when comparing MIC and WGS results. Numbers in brackets for each taxon correspond to the number of isolates, and to the number of isolate-antimicrobial combinations tested. Numbers on top of the bars correspond to the respective number of results. MIC-S cases correspond to S and I phenotypes according to EUCAST clinical breakpoints v12.0, and MIC-R cases correspond to R phenotypes according to the same guideline. WGS-S correspond to cases where no acquired ARGs nor chromosomal PMs have been detected, and WGS-R correspond to cases where they have.