Table 2.

Comparison of consensus sequences generated from the same sample using the amplicon-based or shotgun metagenomic approach and comparison to the reference genome with accession number NC_001672.1. (Abbreviations: aa = amino acids, bp = base pairs, UTR = untranslated region, Ampli = amplicon-based sequencing, Meta = shotgun metagenomic sequencing).

	Length of Sequence		Length of Polyprotein		Length of UTR (5′ URT/3′ UTR) [bp]		GC Content
	Ampli	Meta	Ampli	Meta	Ampli	Meta	Ampli	Meta
Reference NC_001672.1	11,141		10,245 bp /3414 aa		131/764		54%
2008-P2-S1/S2	11,142	11,091	10,245 bp /3414 aa	10,245 bp /3414 aa	131/766	131/715	54%	54%
2019-P18-S1/S2	11,009	11,005	10,245 bp /3414 aa	10,245 bp /3414 aa	87/673	87/670	53%	53%
2020-P19-S1/S2	11,008	11,041	10,245 bp /3414 aa	10,245 bp /3414 aa	73/730	106/690	54%	54%
2020-P21-S1/S2	11,009	11,057	10,245 bp /3414 aa	10,245 bp /3414 aa	87/677	111/701	54%	54%