| Add additional rows as needed for each resource type |
Include species and sex when applicable. |
Include name of manufacturer, company, repository, individual, or research lab. Include PMID or DOI for references; use “this paper” if new. |
Include catalog numbers, stock numbers, database IDs or accession numbers, and/or RRIDs. RRIDs are highly encouraged; search for RRIDs at https://scicrunch.org/resources. |
Include any additional information or notes if necessary. |
| Antibody |
Rabbit anti-GFP (IP) |
Abcam |
ab290; RRID:AB_303395 |
|
| Antibody |
Chicken anti-GFP (IF) |
Abcam |
ab13970; RRID:AB_300798 |
|
| Antibody |
Rabbit anti-BMAL1 (IF) |
Novus Biologicals |
NB100–2288; RRID:AB_10000794 |
|
| Antibody |
Mouse anti-GFAP (IF) |
Novus Biologicals |
NBP1–05197; RRID:AB_1555288 |
|
| Bacterial or Viral Strain |
AAV8-GFAP-eGFP |
University of North Carolina Viral Vector Core |
RRID:SCR_002448 |
|
| Bacterial or Viral Strain |
AAV8-GFAP-Cre-GFP |
University of North Carolina Viral Vector Core |
RRID:SCR_002448 |
|
| Chemical Compound or Drug |
RNasin® Plus ribonuclease inhibitor |
Promega |
cat# N2615 |
|
| Chemical Compound or Drug |
EDTA-free protein inhibitor cocktail |
Roche through Sigma-Aldrich |
cat# 11873580001 |
|
| Commercial Assay Or Kit |
RNAscope in situ hybridization Fluorescent Multiplex Assay |
Advanced Cell Diagnostics |
cat# 320850 |
|
| Commercial Assay Or Kit |
RNeasy Plus Mini Kit |
QIAGEN |
cat# 74134 |
|
| Commercial Assay Or Kit |
iScript cDNA synthesis kit |
Bio-Rad |
cat# 1708891 |
|
| Commercial Assay Or Kit |
SsoAdvanced Universal SYBR Green Supermix kit |
Bio-Rad |
cat# 1725272 |
|
| Commercial Assay Or Kit |
EZNA Micro Elute Total RNA kit |
Omega Bio-Tek |
cat# R6831–02 |
|
| Commercial Assay Or Kit |
Qubit RNA High Sensitivity assay |
Invitrogen |
cat# Q32852; RRID:SCR_018095 |
|
| Commercial Assay Or Kit |
Agilent RNA 6000 Pico Kit |
Agilent |
cat# 5067–1513; RRID:SCR_018043 |
|
| Commercial Assay Or Kit |
TruSeq Stranded Total RNA Kit |
Illumina |
cat# 20020599 |
|
| Commercial Assay Or Kit |
BioVision Lactate Colorimetric/Fluorometric Assay |
BioVision Inc. |
cat# K607 |
|
| Commercial Assay Or Kit |
GSH-Glo™ Glutathione Luminescence Assay |
Promega |
cat# V6912 |
|
| Organism/Strain |
Mouse: Bmal1lox (BMFL); male & female |
The Jackson Laboratory |
JAX Stock No: 007668 |
B6.129S4-Arntltm1Weit/J |
| Organism/Strain |
Mouse: Aldh1l1-eGFP/Rpl10a; male & female |
The Jackson Laboratory |
JAX Stock No: 007668; RRID:IMSR_JAX:030247 |
B6;FVB-Tg(Aldh1l1-EGFP/Rpl10a)JD133Htz/J |
| Sequence-Based Reagent |
Primers for RT-qPCR, see Table S1
|
This paper |
N/A |
|
| Sequence-Based Reagent |
Aldh1l1 RNAscope Catalog Probe |
Advanced Cell Diagnostics |
cat# 405891 |
|
| Sequence-Based Reagent |
eGFP RNAscope Catalog Probe |
Advanced Cell Diagnostics |
cat# 400281-c3 |
|
| Sequence-Based Reagent |
Slc32a1 RNAscope Catalog Probe |
Advanced Cell Diagnostics |
cat# 319191-c2 |
Vgat
|
| Software; Algorithm |
Graphpad Prism 9 Statistical Software |
Graphpad Software |
RRID:SCR_002798 |
|
| Software; Algorithm |
Ethovision XT 13 Behavioral Software |
Noldus Information Tech Inc |
RRID:SCR_000441 |
|
| Software; Algorithm |
Med-PC software suite (operant behavior) |
Med-Associates Inc |
RRID:SCR_012156 |
|
| Software; Algorithm |
CFX Maestro Software (Real Time qPCR) |
Bio-Rad |
N/A |
|
| Software; Algorithm |
Rstudio |
https://www.rstudio.com/
|
RRID:SCR_000432 |
|
| Software; Algorithm |
FastQC v0.11.7 |
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
RRID:SCR_014583 |
|
| Software; Algorithm |
HISAT2 v2.1 |
http://daehwankimlab.github.io/hisat2/
|
RRID:SCR_015530 |
|
| Software; Algorithm |
Bioconductor edgeR package in R |
https://bioconductor.org/packages/release/bioc/html/edgeR.html
|
RRID:SCR_012802 |
|
| Software; Algorithm |
JTK_CYCLE package in R (rhythmicity detection) |
DOI: 10.1177/0748730410379711 |
RRID:SCR_017962 |
|
| Software; Algorithm |
DisplayR online data anaylsis and visualization software |
https://www.displayr.com
|
N/A |
|
| Software; Algorithm |
Cytoscape v3.1.2 interaction network bioinformatics software |
https://cytoscape.org/
|
RRID:SCR_003032 |
|
| Software; Algorithm |
Ingenuity Pathway Analysis (IPA) |
QIAGEN |
RRID:SCR_008653 |
|
| Software; Algorithm |
Metascape (Bioinformatics Database) |
https://metascape.org
|
RRID:SCR_016620 |
|
| Software; Algorithm |
Olympus Fluoview FV10-ASW 4.2 viewer software |
Olympus |
RRID:SCR_014215 |
|
| Software; Algorithm |
pCLAMP 11 electrophysiology software suite |
Molecular Devices |
RRID:SCR_011323 |
|
| Other |
QIAshredder homogenization columns |
QIAGEN |
cat# 79656 |
|
| Other |
VECTASHIELD mountig medium plus DAPI |
Vector Laboratories |
RRID:AB_2336788 |
|
| Other |
Dynabeads Protein G for Immunoprecipitation |
Invitrogen |
cat# 10009D |
|
| Other |
ImmEdge® hydrophobic barrier |
Vector Laboratories |
RRID:AB_2336517 |
|
| Other |
ProLong™ Gold Antifade Mountant |
Invitrogen |
cat# P36930
|
|
