Table 1.
A summary of datasets used for analysis.
| Data | Reference | Accession | Protocol | Num. of cells total | Num. of Tumor cells | Num. of cell types |
|---|---|---|---|---|---|---|
| Pancreas 2K | [20] | GSE84133 | inDrops | 2126 | None | 10 (10) |
| Pancreas 8K | [21] | GSE85241 | CEL-seq2 | 8569 | None | 14 (13) |
| CBMC 8K | [22] | GSE100866 | Drop-seq | 8617 | None | 15 (11) |
| PBMC 68K | [23] | GSE93421 | 10X genomics | 68,579 | None | 11 (6) |
| Lung 29K | [24] | ERP114453 | 10X v2 | 57202* | None | 28 (18) |
| Lung 38K | [25] | SRP218543 | 10X v2 | 114396** | None | 31 (24) |
| Melanoma 5K | [26] | GSE72056 | Smart-seq2 | 4513 | 1251 | 11 (8) |
| HeadNeck 6K | [27] | GSE103322 | Smart-seq2 | 5902 | 2215 | 10 (10) |
The numbers in brackets represent the number of cell types with the renaming we discussed before.
*,** down-sampled by 2 and 3, respectively.