Table 2.
Lineage defining mutations and their frequency in the index case (NYCPHL-002130) and named contact partner (NYCPHL-002461).
| Lineage | Defining mutations | Frequency | |
|---|---|---|---|
| NYCPHL-002130 | NYCPHL-002461 | ||
| B.1 | C241T | 0.940 | 0.916 |
| C3037T | 0.939 | 0.934 | |
| C14408T | 0.966 | 0.931 | |
| A23403G | 0.949 | 0.945 | |
| Alpha | C913T | 0.946 | 0.736 |
| C3267T | 0.973 | 0.755 | |
| A5388C | 0.949 | 0.761 | |
| C5986T | 0.983 | 0.771 | |
| T6954C | 0.977 | 0.787 | |
| ORF1a: Δ3675-3677 | 0.983 | 0.806 | |
| C14676T | 0.945 | 0.625 | |
| C15279T | 1.000 | 0.772 | |
| T16176C | 0.985 | 0.785 | |
| S: Δ69-70 | 1.000 | 0.983 | |
| S: Δ144 | 0.990 | 0.978 | |
| A23063T | 0.944 | 0.776 | |
| C23271A | 0.968 | 0.737 | |
| C23604A | 0.902 | 0.711 | |
| C23709T | 0.939 | 0.780 | |
| T24506G | 0.971 | 0.766 | |
| G24914C | 0.947 | 0.751 | |
| C27972T | 0.978 | 0.706 | |
| G28048T | 0.982 | 0.723 | |
| A28111G | 0.978 | 0.718 | |
| G28280C | 0.945 | 0.726 | |
| A28281T | 0.963 | 0.727 | |
| T28282A | 0.963 | 0.736 | |
| C28977T | 0.962 | 0.704 | |
| Epsilon | C1059T | 0.000 | 0.214 |
| A12878G | 0.000 | 0.172 | |
| G17014T | 0.000 | 0.169 | |
| G21600T | 0.000 | 0.170 | |
| G22018T | 0.000 | 0.124 | |
| T22917G | 0.000 | 0.181 | |
| T24349C | 0.000 | 0.164 | |
| G25563T | 0.000 | 0.178 | |
| C26681T | 0.000 | 0.182 | |
| G27890T | 0.000 | 0.235 | |
| A28272T | 0.000 | 0.000 | |
| C28887T | 0.000 | 0.227 | |
Δ in-frame codon deletion.