Table 3.

Four gamete recombination test results for 15 sets of aligned read fragments in the S (spike) and N (nucleoprotein) genes.

Gene	Fragment	Start1	End1	Recombination test p-value
				PHI	MCL	R2 vs Dist
S	1	21354	21730	>0.9	>0.9	>0.9
	2	21658	22038	>0.9	>0.9	>0.9
	3	21962	22346	>0.9	>0.9	>0.9
	4	22263	22650	0.682	0.393	0.132
	5	22517	22903	>0.9	0.401	0.142
	6	22798	23212	<0.001	0.355	0.3
	7	23123	23522	>0.9	<0.001	0.005
	8	23444	23847	<0.001	0.317	0.008
	9	23790	24169	>0.9	0.047	0.03
	10	24079	24467	>0.9	0.003	<0.001
	11	24392	24789	<0.001	0.071	0.477
	12	24697	25076	0.741	0.155	0.208
N	1	28395	28779	0.491	0.482	0.459
	2	28678	29063	>0.9	0.868	0.628
	3	28986	29378	<0.001	<0.001	<0.001

¹Position relative to the Wuhan-Hu-1 reference strain.