Table 2.

Number and quality of metagenome-assembled genomes (MAGs) of each individual dataset.

Host	Region	Number of samples	Number of Genomes (MAGs)1	Medium-quality (MAGs)2	High-quality (MAGs)3
Human (N = 34)	Castanhal	6	131	68	63
	Bragança	7	219	128	91
	Blumenau	7	167	91	76
	Dourados	7	153	87	66
	Fortaleza	7	294	164	130
	Total	34	964	538	426
Cattle (N = 28)	Castanhal	6	138	75	63
	Bragança	6	183	134	49
	Blumenau	6	183	111	72
	Dourados	6	146	86	60
	Fortaleza	4	117	73	44
	Total	28	767	479	288
Swine (N = 15)	Castanhal	3	80	36	44
	Bragança	3	75	32	43
	Blumenau	3	112	62	50
	Dourados	3	109	60	49
	Fortaleza	3	147	77	70
	Total	15	523	267	256
Poultry (N = 30)	Castanhal	6	148	96	52
	Bragança	6	90	42	48
	Blumenau	6	124	62	62
	Dourados	6	141	73	68
	Fortaleza	6	158	85	73
	Total	30	661	358	303

¹Genomes with completeness => 50.00 and contamination = <10.00 ²Genomes with completeness = >50.00 and = <90.00 and contamination = <10.00; ³Genomes with completeness = >90.00 and contamination = <5.00.