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. 2022 Jun 27;38(Suppl 1):i185–i194. doi: 10.1093/bioinformatics/btac245

Table 7.

Dictionary construction times in minutes (using a single processing thread) and peak internal memory used during construction in GB (blight’s performance was the same for all values of b in the experiment)

Dictionary Cod
Kestrel
Human
Bacterial
Min GB Min GB Min GB Min GB
dBG-FM, s =128 28.5 0.5 100.0 0.7
dBG-FM, s =64 28.5 0.6 100.0 0.9
dBG-FM, s =32 28.5 0.7 100.0 1.1
Pufferfish, sparse 15.5 3.3 35.2 6.7 86.0 19.4 200.8 40.1
Pufferfish, dense 13.0 2.8 29.2 5.9 70.7 14.0 173.2 30.4
Blight 5.0 3.3 11.0 7.0 25.0 7.5 50.0 15.8
SSHash, regular 1.5 2.6 3.8 5.7 12.5 15.4 29.6 33.4
SSHash, canonical 2.0 2.8 4.4 5.8 16.2 17.3 36.0 36.6