1 |
Network medicine framework for identifying drug-repurposing opportunities for COVID-19 |
13 Datasets, DrugBank, STRING |
989 Drugs, 77 Validated in VeroE6 Cells, 76/77 validated in Human Cells |
Network proximity, network diffusion, Network AI |
Experimental, Ensembl algorithmic prediction |
[176] |
2 |
Drug repurposing for COVID-19 using graph neural network and harmonizing multiple evidence |
CTDbase, STRING, Hetionet, DrugBank |
22 drugs and drug combinations |
Validation with multiple sources, In-vitro screening |
GSEA, Plotly, Gephi, GNN |
[178] |
3 |
COVID-19 Multi-Targeted Drug Repurposing Using Few-Shot Learning |
Chemical Molecules, ZINC, ChEMBL, |
– |
Loss function and metrics |
Few-shot learning |
[179] |
4 |
Machine learning and network medicine approaches for drug repositioning for COVID-19 |
STRING, ChEMBL, DrugBank |
– |
In-vitro, In-vivo, clinical trials, and CMAP |
– |
[180] |
5 |
Using informative features in machine learning based method for COVID-19 drug repurposing |
STRING, DrugBank, Uniprot |
80 % of the predictions were verified |
Statistical and clinical evidence |
Enrichment analysis, |
[182] |
6 |
An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19 |
Literature, DrugBank, CTD, Uniprot, CMap |
41 Drugs |
wet-lab, Expression profiles of patients and drug perturbation cells, clinical trials data |
Molecular docking |
[183] |
7 |
Network-based repurposing identifies anti-alarmins as drug candidates to control severe lung inflammation in COVID-19 |
Uniprot, STRING, CMap, LINCS, GEO |
– |
Gene expression profiling, CMap ranking |
LINCS tools |
[184] |
8 |
Drug repurposing for COVID-19 via knowledge graph completion |
PubMed and Covid-19 research literature, ClinicalTrials.gov |
5 Drugs |
ClinicalTrials.gov |
– |
[185] |
9 |
Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease |
PolypharmDB, DrugBank, STRING |
26 Drugs |
Infectivity assays, combination of human coronavirus entry and infection assays |
MatchMaker |
[186] |