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. 2022 Jun 28;153:113350. doi: 10.1016/j.biopha.2022.113350

Table 6.

AI Based drug repurposing application on networks.

Title Datasets used Repurposed Drugs Evaluation Criteria Tools used Ref.
1 Network medicine framework for identifying drug-repurposing opportunities for COVID-19 13 Datasets, DrugBank, STRING 989 Drugs, 77 Validated in VeroE6 Cells, 76/77 validated in Human Cells Network proximity, network diffusion, Network AI Experimental, Ensembl algorithmic prediction [176]
2 Drug repurposing for COVID-19 using graph neural network and harmonizing multiple evidence CTDbase, STRING, Hetionet, DrugBank 22 drugs and drug combinations Validation with multiple sources, In-vitro screening GSEA, Plotly, Gephi, GNN [178]
3 COVID-19 Multi-Targeted Drug Repurposing Using Few-Shot Learning Chemical Molecules, ZINC, ChEMBL, Loss function and metrics Few-shot learning [179]
4 Machine learning and network medicine approaches for drug repositioning for COVID-19 STRING, ChEMBL, DrugBank In-vitro, In-vivo, clinical trials, and CMAP [180]
5 Using informative features in machine learning based method for COVID-19 drug repurposing STRING, DrugBank, Uniprot 80 % of the predictions were verified Statistical and clinical evidence Enrichment analysis, [182]
6 An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19 Literature, DrugBank, CTD, Uniprot, CMap 41 Drugs wet-lab, Expression profiles of patients and drug perturbation cells, clinical trials data Molecular docking [183]
7 Network-based repurposing identifies anti-alarmins as drug candidates to control severe lung inflammation in COVID-19 Uniprot, STRING, CMap, LINCS, GEO Gene expression profiling, CMap ranking LINCS tools [184]
8 Drug repurposing for COVID-19 via knowledge graph completion PubMed and Covid-19 research literature, ClinicalTrials.gov 5 Drugs ClinicalTrials.gov [185]
9 Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease PolypharmDB, DrugBank, STRING 26 Drugs Infectivity assays, combination of human coronavirus entry and infection assays MatchMaker [186]