TABLE 3.
RFLPs of ITS regions for basidiomycetes
Species and isolate(s)a | RFLPs (bp) obtained with:
|
|||||
---|---|---|---|---|---|---|
AluI | HaeIII | TaqI | TaqI-HaeIII | Uncut ampliconb | ||
Brown-rot basidiomycetes | ||||||
Coniophora puteana | 500 | 470 | 530 | 247 | ||
Fp-90099-Sp | 187 | 242 | 185 | 197 | ||
170 | 114 | 71 | 182 | |||
91 | 59 | 69 | ||||
23 | 59 | |||||
41 | ||||||
23 | ||||||
Total | 948 | 908 | 786 | 813 | 970 | |
Fomitopsis pinicola | 380 | 545 | 310 | 248 | ||
K8Sp | 200 | 127 | 203 | 165 | ||
90 | 98 | 165 | 107c | |||
52 | 62 | 130 | 62 | |||
Total | 722 | 832 | 870 | 796 | 930 | |
Gloeophyllum trabeum | 435 | 670 | 500 | 420 | ||
This lab | 155 | 107 | 318 | 215 | ||
Mad-617-R | 105 | 72 | 72 | 107 | ||
ATCC 11539 | 86 | 72 | ||||
Total | 781 | 849 | 890 | 814 | 890 | |
Gloeophyllum sepiarum | 435 | 670 | 500 | 420 | ||
10-BS2-2 | 155 | 107 | 170 | 140 | ||
105 | 72 | 140 | 107 | |||
86 | 72 | 72 | ||||
Total | 781 | 849 | 882 | 739 | 890 | |
Leucogyrophana pinastri | 580 | 320 | 400 | 245 | ||
This lab | 300 | 245 | 180 | 127 | ||
100 | 170 | 127 | 95 | |||
140 | 95 | 72 | ||||
63 | 78 | 63 | ||||
55 | 63 | 37 | ||||
Total | 980 | 993 | 943 | 639 | 1,050 | |
Postia placenta | 448 | 610 | 530 | 445 | ||
This lab | 240 | 110d | 335 | 115d | ||
Mad-698-R | 100 | 72 | 72 | 72 | ||
Total | 788 | 902 | 937 | 747 | 930 | |
Serpula lacrimans | 810 | 800 | 485 | 485 | ||
Harm-888-R | 100 | 108 | 215 | 215 | ||
ATCC 36335 | 81 | 77 | ||||
68 | 68 | |||||
50 | 39 | |||||
Total | 910 | 908 | 899 | 884 | 930 | |
White-rot basidiomycetes | ||||||
Irpex lacteus | ||||||
KTS 003 | 500 | 425 | 270 | 245 | ||
ATCC 60993 | 105 | 345 | 245 | 140 | ||
93 | 105 | 150 | 108 | |||
61 | 108 | 77 | ||||
77 | 61 | |||||
61 | ||||||
Total | 698 | 936 | 911 | 631 | 960 | |
Lentinula edodes | 515 | 860 | 540 | 540 | ||
117=lt(d) | 235 | 102 | 355 | 255 | ||
105 | 50 | 60 | 102 | |||
60 | ||||||
Phanerochaete chrysosporium | 515 | 705 | 385 | 385 | ||
This lab | 165 | 98 | 315 | 220 | ||
94 | 50 | 98 | 98 | |||
65 | 65 | |||||
Total | 774 | 853 | 863 | 768 | 850 | |
Phanerochaete chrysosporium | 515 | 705 | 330 | 330 | ||
ATCC 24725 | 165 | 98 | 300 | 208 | ||
94 | 50 | 98 | 98 | |||
59 | 59 | |||||
32 | 32 | |||||
Total | 774 | 853 | 819 | 727 | 850 |
Resinicium bicolor | 380 | 800 | 270 | 270 | |
HHB-8850-sp | 150 | 50 | 245 | 245 | |
ATCC 44175 | 98 | 215 | 215 | ||
ATCC 64897 | 69 | 60 | 60 | ||
Total | 697 | 850 | 790 | 790 | 850 |
Scytinostroma galactinum | 595 | 540 | 315 | 315 | |
MB-1880-sp | 204 | 268 | 200 | 137 | |
94 | 60 | 164 | 116 | ||
75 | 75 | ||||
60 | 60 | ||||
50 | |||||
Total | 893 | 868 | 814 | 753 | 930 |
Scytinostroma galactinum | 595 | 540 | 220 | 220 | |
ATCC 44178 | 204 | 268 | 200 | 137 | |
94 | 60 | 116 | 116 | ||
91 | 91 | ||||
75 | 75 | ||||
60 | 60 | ||||
50 | |||||
Total | 893 | 868 | 762 | 749 | 930 |
Scytinostroma galactinum | 595 | 540 | 200 | 137 | |
ATCC 64896 | 204 | 268 | 137 | 116 | |
94 | 60 | 116 | 91 | ||
91 | 75 | ||||
75 | 60 | ||||
60 | 50 | ||||
Total | 893 | 868 | 679 | 529 | 930 |
Trametes versicolor | 360 | 300d | 320 | 260 | |
This lab | 146 | 105 | 172 | 135 | |
93 | 70 | 74 | 108 | ||
74 | 74 | ||||
58 | 50 | ||||
Total | 731 | 775 | 566 | 627 | 910 |
Trametes versicolor | 360 | 300d | 320 | 255 | |
Fp-101664-Sp | 146 | 210 | 172 | 205 | |
93 | 70 | 74 | 135 | ||
74 | 113 | ||||
58 | 74 | ||||
50 | |||||
Total | 731 | 880 | 566 | 832 | 910 |
Trichaptum abietinum | 405 | 900 | 470 | 335 | |
1247 MJL | 365 | 310 | 335 | 145 | |
215 | 145 | 53 | 62 | ||
155 | 53 | ||||
50 | |||||
Total | 1,190 | 1,408 | 858 | 542 | 1,460 |
Ectomycorrhiza | |||||
Pisolithus tinctorius | 435 | 605 | 208 | 208 | |
ATCC 38054 | 182 | 170 | 150 | 127 | |
165 | 59 | 127 | 100 | ||
87 | 76 | 69 | |||
59 | 59 | ||||
23 | 44 | ||||
23 | |||||
Total | 869 | 834 | 643 | 630 | 890 |
Soil-borne pathogen of herbaceous plants | |||||
Rhizoctonia solani | 415 | 620 | 500 | 335 | |
1AP | 245 | 260 | 335 | 260 | |
98 | 59 | 242 | |||
83 | 59 | ||||
Total | 841 | 880 | 894 | 896 | 970 |
All isolates of a species which have identical RFLP profiles per restriction endonuclease for all enzymes are listed together. If different isolates of a species have different RFLP profiles for at least one of the restriction endonucleases, then those isolates are listed separately.
Amplicon of the ITS region amplified by primers ITS1-F (specific for higher fungi) and ITS4-B (specific for basidiomycetes).
This fragment is a triplet, as reflected in the fragment total.
This fragment is a doublet, as reflected in the fragment total.