TABLE 2.
Quantitative trait nucleotides (QTNs) identified for days to 5% flowering (DF5).
| QTN | Allele | Physical position (bp) | LOD score | −log10(p) | r 2 (%) | MAF | Environments (methods a ) |
|---|---|---|---|---|---|---|---|
| Lu01_17201820 | G/A | Lu01, 17201820 | 3.01–6.88 | 3.71–7.74 | 6.15–19.21 | 0.19 | AK19–20 (4); DL18–19 (5) |
| Lu02_16065021 | G/T | Lu02, 16065021 | 3.72–3.97 | 4.45–4.72 | 6.33–12.60 | 0.27 | DL18–19 (4, 3) |
| Lu03_715991 | T/G | Lu03, 715991 | 4.66–8.16 | 5.44–9.05 | 5.16–6.98 | 0.49 | AK19–20 (4, 5) |
| Lu03_14655958 | G/T | Lu03, 14655958 | 5.25–6.20 | 6.06–7.04 | 23.25–28.27 | 0.25 | DL19–20 (2, 5) |
| Lu03_19174892 | T/G | Lu03, 19174892 | 3.85–5.45 | 4.59–6.26 | 16.64–16.71 | 0.25 | DL19–20 (4, 3) |
| Lu03_19423426 | A/G | Lu03, 19423426 | 6.27–9.86 | 7.11–10.80 | 9.96–18.78 | 0.25 | AK19–20 (4, 2, 5, 3) |
| Lu05_16229944 | T/G | Lu05, 16229944 | 3.22–5.26 | 3.93–6.07 | 3.15–7.88 | 0.26 | AK19–20 (4, 2, 5, 3) |
| Lu07_4061268 | T/C | Lu07, 4061268 | 3.10–5.06 | 3.80–5.86 | 1.24–4.01 | 0.49 | AK19–20 (4, 2, 5, 3) |
| Lu08_31911 | A/G | Lu08, 31911 | 3.00–3.51 | 3.70–4.24 | 1.62–6.28 | 0.32 | DL17–18 (1, 5, 3) |
| Lu08_2981314 | C/T | Lu08, 2981314 | 3.59–5.84 | 4.32–6.67 | 6.78–17.31 | 0.24 | AK18–19 (2, 5, 3); DL18–19 (5) |
| Lu09_16962441 | A/G | Lu09, 16962441 | 3.29–3.86 | 4.00–4.60 | 6.62–8.93 | 0.41 | DL19–20 (2, 3) |
| Lu09_21344639 | A/G | Lu09, 21344639 | 4.86–6.16 | 5.65–7.00 | 10.82–15.80 | 0.29 | AK19–20 (4, 2, 5, 3) |
| Lu10_15001635 | G/A | Lu10, 15001635 | 3.75–5.65 | 4.49–6.47 | 5.96–11.55 | 0.46 | DL17–18 (4, 5) |
| Lu11_1592089 | T/G | Lu11, 1592089 | 3.52–7.35 | 4.25–8.22 | 10.17–35.28 | 0.22 | AK18–19 (4, 2, 5, 3); DL17-18 (4, 5, 3); DL19-20 (3) |
| Lu11_3283122 | C/A | Lu11, 3283122 | 3.40–7.10 | 4.12–7.97 | 4.78–10.93 | 0.49 | AK18–19 (4, 2, 5); DL17–18 (5); DL18–19 (5) |
| Lu11_19845992 | C/T | Lu11, 19845992 | 4.28–4.86 | 5.05–5.65 | 4.89–8.00 | 0.48 | DL19–20 (2, 5) |
| Lu12_2201590 | T/C | Lu12, 2201590 | 3.46–7.98 | 4.19–8.87 | 10.47–15.29 | 0.42 | AK18–19 (4, 2, 5); DL18–19 (4, 2, 3) |
| Lu13_15811472 | A/G | Lu13, 15811472 | 3.77–4.05 | 4.51–4.81 | 7.08–18.26 | 0.16 | DL19–20 (4, 3) |
| Lu15_6199067 | T/C | Lu15, 6199067 | 3.89–5.17 | 4.63–5.97 | 16.01–19.39 | 0.28 | DL18–19 (4, 3) |
| Lu15_12894145 | T/C | Lu15, 12894145 | 3.49–6.84 | 4.22–7.70 | 3.76–4.68 | 0.31 | DL18–19 (2, 3) |
| Lu15_15418733 | G/T | Lu15, 15418733 | 5.73–7.52 | 6.56–8.40 | 6.98–9.61 | 0.42 | AK19–20 (4, 5, 3) |
a
Methods: FASTmrEMMA (1), FASTmrMLM (2), ISIS EM-BLASSO (3), mrMLM (4), pLARmEB (5), QTNs, with normal and bold fonts are designated as strong and very strong QTNs, respectively. Underlined QTNs, indicates that it was also identified in DF50 and/or DF95 traits.