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. 2022 Jun 16;11:e76356. doi: 10.7554/eLife.76356

Table 1. Size in atoms, length of productions MD simulations, temperature, speed of the simulations on Frontera at TACC and lipid composition of the flat bilayers and the vesicle of the different systems.

qscff 1699436 atoms 750 ns 310 K 24 ns/day with 16 nodes
Upper bilayer CHL1 POPC POPS SAPE SDPE SDPS total
Upper leaflet 540 468 0 72 120 0 1200
% 45 39 0 6 10 0
Lower leaflet 540 146 84 120 240 96 1226
% 44 11.9 6.9 9.8 19.6 7.8
Lower bilayer CHL1 POPC POPS SAPI2D SAPE SDPE SDPS total
Upper leaflet 540 134 120 60 84 168 120 1226
% 44 11 9.8 4.9 6.9 13.7 9.8
Lower leaflet 540 538 0 0 48 84 0 1200
% 45 44 0 0 4 7 0
sqscff 1700475 atoms 270 ns 310 K 24 ns/day with 16 nodes
qscv 3222393 atoms 520 ns 310 K 23 ns/day with 32 nodes
454 ns 325 K
Vesicle CHL1 POPC SAGL SAPE SAPI2D SDPE SDPS SOPS total
Outer leaflet 1258 296 0 534 0 282 210 199 2779
% 45.3 10.6 0 19.2 0 10.1 7.6 7.2
Inner leaflet 814 668 0 183 0 99 1 1 1766
% 46.1 37.8 0 10.4 0 5.6 0.1 0.1
Flat bilayer CHL1 POPC SAGL SAPE SAPI2D SDPE SDPS SOPS total
Upper leaflet 540 96 12 84 60 156 120 120 1188
% 45.4 8.1 1 7.1 5.1 13.1 10.1 10.1
Lower leaflet 540 516 12 36 0 84 0 0 1188
% 45.4 43.4 1 3 0 7.1 0 0
prsg 5056443 atoms 336 ns 310 K 13 ns/day with 32 nodes
Flat bilayer CHL1 POPC SAGL SAPE SAPI2D SDPE SDPS SOPS total
Upper leaflet 830 151 18 132 93 262 182 181 1849
% 44.9 8.2 1 7.1 5 14.2 9.8 9.8
Lower leaflet 810 774 18 72 0 126 0 0 1800
% 45 43 1 4 0 7 0 0
prs2 5870280 atoms 310 ns 310 K 16 ns/day 48 nodes
Flat bilayer CHL1 POPC SAGL SAPE SAPI2D SDPE SDPS SOPS total
Upper leaflet 1035 184 23 161 115 322 230 230 2300
% 45 8 1 7 5 14 10 10
Lower leaflet 1009 964 22 88 0 154 0 0 2237
% 45.1 43.1 1 3.9 0 6.9 0 0
prsncpxca 5870246 atoms 439 ns 310 K 16 ns/day 48 nodes

Vesicle: same as qscv system.

Flat bilayer: same as prs2 system.