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. Author manuscript; available in PMC: 2023 Mar 8.
Published in final edited form as: J Chem Theory Comput. 2022 Feb 11;18(3):1359–1381. doi: 10.1021/acs.jctc.1c00590

Figure 11:

Figure 11:

It is more challenging to rehydrate Site 1-2 (red, blue) than Site 3-4 (green, magenta) in BLUES simulations of (A) the HSP90 system (PDB: 3RLP). Bar graphs show the water occupancy of target sites in a single (B) BLUES simulation (all ordered water molecules were retained prior to simulations), (C-D) BLUES simulations (all ordered water molecules were removed prior to simulations).