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. 2022 Jun 1;10(3):e02337-21. doi: 10.1128/spectrum.02337-21

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Copyright © 2022 Gaudreau et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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FIG 2 — Maximum-likelihood phylogenetic tree and AMR- and virulence-associated profiles of the 31 sequenced Shigella sonnei cases related to an MSM outbreak in Montréal, 2017–2019. The phylogeny was based on 280 shared hqSNV positions from a shared genome of 3,534,922 bp determined by SNVPhyl for the sequenced Shigella sonnei isolates (n = 31) under study in relation to the reference chromosome CP000038.1 (illustrated as Ss046). The scale bar refers to the number of hqSNVs in function of the branch length, for the exception of Ss046, where the branch has been manually trimmed. The phylogenetic tree was produced using FigTree v1.4.3.