TABLE 1.

Information on the RNA-seq data set used in this study

Virus	Strain	Reference	Cell types	RNase Ra	NCBI GEO ID	NCBI SRA ID	Layout	cDNA library	Bases (Gb)	Read length
HCMV	TB40/E	KF297339.1	EC	−	GSE73853	SRR2747466	Single	PolyA selected	17.7	100
HCMV	TB40/E	KF297339.1	EC	−	GSE73853	SRR2747467	Single	PolyA selected	20.8	100
HCMV	TB40/E	KF297339.1	NPCs	−	GSE73853	SRR2747469	Single	PolyA selected	23.3	100
HCMV	TB40/E	KF297339.1	NPCs	−	GSE73853	SRR2747470	Single	PolyA selected	21.9	100
HCMV	TB40/E	KF297339.1	HFF	−	GSE73853	SRR2747463	Single	PolyA selected	19.5	100
HCMV	TB40/E	KF297339.1	HFF	−	GSE73853	SRR2747464	Single	PolyA selected	18.5	100
HCMV	HAN	KJ426589.1	HELF	+	GSE138836	SRR10277187	Paired	Ribosomal RNA removed	25.5	150
KSHV	BCBL1	HQ404500	B cell	+	GSE117798	SRR7611495	Paired	Ribosomal RNA removed	12.9	150
KSHV	BCBL1	HQ404500	B cell	+	GSE117798	SRR7611496	Paired	Ribosomal RNA removed	11.6	150
EBV	Akata	KC207813.1	B cell	+	GSE116675	SRR7474066	Paired	Ribosomal RNA removed	11	100
EBV	Akata	KC207813.1	B cell	+	GSE116675	SRR7474067	Paired	Ribosomal RNA removed	17.3	100
EBV	Akata	KC207813.1	B cell	+	GSE116675	SRR7474068	Paired	Ribosomal RNA removed	18	100

^a+, RNase R treatment; −, without RNase R treatment.