Table 1.
Methods to study RG4.
| Method | Characterization on RG4 | References |
|---|---|---|
| NMR | 3D structure in vitro | Smith and Feigon, 1992 |
| CD | Topology in vitro | Vorlíčková et al., 2012 |
| UV-thermal melting | Thermostability in vitro | Mergny et al., 1998 |
| QGRS mapper | Prediction in silico | Kikin et al., 2006 |
| Quadparser | Prediction in silico | Huppert and Balasubramanian, 2005 |
| Intrinsic fluorescence | Detection in vitro | Huang et al., 2014 |
| BG4 | Visualization in fixed cells | Biffi et al., 2014 |
| G4Hunter | Prediction in silico | Bedrat et al., 2016 |
| rG4-seq | Single motif in vitro | Kwok et al., 2016a |
| DMS based seq | Quantitative measurement at single motif in vivo | Guo and Bartel, 2016 |
| QUMA-1 | Visualization in living cells | Chen et al., 2018 |
| SHALiPE-seq | Quantitative measurement at single motif in vivo | Yang et al., 2020 |
| Keth-seq | Detection at single motif in vivo | Weng et al., 2020 |
Summation of the key methods for RNA G-quadruplex prediction and detection. The method names, their application, and references are listed.