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. 2022 Jun 15;13:926953. doi: 10.3389/fpls.2022.926953

Table 1.

Methods to study RG4.

Method Characterization on RG4 References
NMR 3D structure in vitro Smith and Feigon, 1992
CD Topology in vitro Vorlíčková et al., 2012
UV-thermal melting Thermostability in vitro Mergny et al., 1998
QGRS mapper Prediction in silico Kikin et al., 2006
Quadparser Prediction in silico Huppert and Balasubramanian, 2005
Intrinsic fluorescence Detection in vitro Huang et al., 2014
BG4 Visualization in fixed cells Biffi et al., 2014
G4Hunter Prediction in silico Bedrat et al., 2016
rG4-seq Single motif in vitro Kwok et al., 2016a
DMS based seq Quantitative measurement at single motif in vivo Guo and Bartel, 2016
QUMA-1 Visualization in living cells Chen et al., 2018
SHALiPE-seq Quantitative measurement at single motif in vivo Yang et al., 2020
Keth-seq Detection at single motif in vivo Weng et al., 2020

Summation of the key methods for RNA G-quadruplex prediction and detection. The method names, their application, and references are listed.