Table 4.
General statistics of predicted protein-coding genes in S. maximus genome.
| Gene set | Protein coding gene number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
| De novo | Genscan | 30,320 | 12,927 | 1,595 | 8.92 | 178.87 | 1,431 |
| AUGUSTUS | 40,007 | 8,114 | 1,220 | 6.53 | 186.85 | 1,246 | |
| Homolog | D.rerio | 38,658 | 12,345 | 1,120 | 6.69 | 167.55 | 1,974 |
| S.maximus | 40,864 | 12,956 | 1,153 | 6.74 | 171.11 | 2,056 | |
| G.aculeatus | 35,093 | 11,413 | 1,114 | 6.89 | 161.56 | 1,748 | |
| A.testudineus | 39,404 | 14,059 | 1,167 | 6.69 | 174.59 | 2,267 | |
| C.semilaevis | 37,758 | 12,151 | 1,163 | 6.84 | 169.92 | 1,880 | |
| O.latipes | 40,717 | 14,894 | 1,149 | 6.36 | 180.75 | 2,566 | |
| T.rubripes | 48,770 | 12,386 | 950.24 | 5.65 | 168.14 | 2,458 | |
| trans.orf/RNAseq | 16,356 | 19,894 | 2,040 | 12.87 | 358.55 | 1,287 | |
| MAKER | 22,442 | 15,828 | 1,703 | 10.51 | 327.83 | 1,302 | |