Table 7.
Overview of the RNA-seq datasets used in this study.
| Stress | SRA Study | SRA-Experiments | Number of individuals | Platform (Illumina) | Size (GB) | References | |
|---|---|---|---|---|---|---|---|
| Crowding | — | SRP129900 | 12 | 500 | HiSeq 4000 | 68.20 | 8 |
| Feeding | myo-inositol | SRP188583 | 15 | 300 | HiSeq 4000 | 115.45 | 10 |
| fish meal, soybean meal | SRP074811 | 2 | 360 | NextSeq 500 | 42.56 | 87 | |
| sodium butyrate, soybean meal | SRP275545 | 6 | 270 | HiSeq 2000 | 50.23 | 88 | |
| Heat | — | SRP152627 | 10 | — | HiSeq 4000 | 88.99 | 6 |
| Oxygen | — | SRP167318 | 9 | 9 | HiSeq 2500 | 58.99 | 7 |
| Pathogens | Enteromyxum scophthalmi | SRP308109 | 49 | 280 | HiSeq 4000 | 381.62 | 3 |
| SRP255305 | 10 | 120 | HiSeq 4000 | 17.55 | 89 | ||
| SRP065375 | 12 | — | HiSeq 2000 | 31.48 | 4 | ||
| SRP050607 | 12 | 120 | HiSeq 2000 | 36.02 | 90 | ||
| Vibrio anguillarum | SRP191266 | 4 | 90 | HiSeq 2500 | 53.34 | 5 | |
| Salinity | — | SRP277001 | 6 | 360 | HiSeq 4000 | 49.35 | 91 |
| SRP238143 | 9 | 180 | HiSeq 2000 | 70.48 | 92 | ||
| SRP153594 | 9 | — | HiSeq 4000 | 70.86 | 9 | ||
| Total | — | — | 165 | — | 1135.12 | ||