Table 2.

Information about the depth of coverage and the total number of sRNA and total RNA reads mapped to each virus.

VirusI	Read length total RNA seq VN999	Reads in total RNA seq VN999II	Depth of Coverage total RNA seq (VN999)x	Read length sRNA seq (VN999 VN1008)I,II	Read length sRNA seq (VN1004 VN1012)I,II	Reads sRNA seq (VN999)II	Depth of coverage in VN999*	Reads sRNA seq (VN1004)II	Depth of coverage in VN1004*	Reads sRNA seq (VN1008)II	Depth of coverage in VN1008*	Reads sRNA seq (VN1012)II	Depth of coverage in VN1012*
PcaRV1	101	2,427,087	38,683	36	50	217,861	1,238	226,485	1,787	168,840	959	295,192	2,329
PcaRV2	101	250,248	8,743	36	50	58,916	734	68,560	1,186	121,361	1,511	102,384	1,771
PcaRV3	101	777,368	14,354	36	50	18,935	125	59,923	548	13,679	90	49,552	453
PcaRV4	101	60,512	889	36	50	72,976	382	136,977	995	73,740	386	183,367	1,332
PcaNSRV1	101	285,239	3,453	36	50	24,637	106	21,332	128	6,624	29	25,261	151

^IVirus, Acronym of a virus.

^IIReads sRNA seq^*, the number of reads that mapped to each virus.

^IIIRead length (insert size) of sRNA and total RNA libraries.

^xThe depth of coverage was calculated using a formula specified in the Materials and Methods section.