Table 1.
Size metrics summary for the ecModels catalog.
| Original GEMs | |||||
|---|---|---|---|---|---|
| Organism | S. cerevisiae | Y. lipolytica | K. marxianus | E. coli | H. sapiens |
| Model ID | yeastGEM_8.3.3 | iYali4 | iSM996 | iML1515 | Human1 |
| Reactions | 3963 | 1924 | 1913 | 2711 | 13101 |
| Metabolites | 2691 | 1671 | 1531 | 1877 | 8400 |
| Genes | 1139 | 847 | 996 | 1516 | 3628 |
| Enzyme-constrained GEMs | |||||
| Model ID | ecYeastGEM | eciYali | eciSM996 | eciML1515 | ecHumanGEM |
| Reactions | 8028 | 3881 | 5334 | 6084 | 46259 |
| Metabolites | 4153 | 1880 | 2064 | 2334 | 12191 |
| Enzymes | 965 | 647 | 716 | 1259 | 3224 |
| Enzyme coverage | 84.72% | 76.39% | 71.89% | 83.05% | 88.86% |
| Reactions w/kcat | 3771 | 1586 | 2891 | 2562 | 27014 |
| Reactions w/Isoenzymes | 504 | 205 | 532 | 456 | 3791 |
| Promiscuous Enzymes | 572 | 324 | 469 | 673 | 2184 |
| Enzyme complexes | 252 | 75 | 27 | 383 | 756 |