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. 2022 Jul 1;116:108260. doi: 10.1016/j.jmgm.2022.108260

Table 2.

Binding energy contributions of top 12 residues of RBD domain of spike proteins. (Energies provided in kcal/mol with their mean values ± standard deviation).

Spike protein (RBD)
WT
N501Y
N501T
Residue Energy Residue Energy Residue Energy
Y505 −5.97 ± 0.32 Q493 −9.07 ± 1.71 F486 −5.46 ± 0.75
F486 −3.30 ± 0.66 Y501 −5.82 ± 1.55 Y489 −4.8 ± 0.32
Y449 −3.00 ± 1.70 Y449 −5.23 ± 0.75 Q498 −4.71 ± 0.54
G476 −2.98 ± 1.72 F486 −5.21 ± 0.50 Y449 −3.8 ± 0.83
N501 −2.79 ± 0.64 Y489 −4.99 ± 0.44 Q493 −3.51 ± 0.38
Y489 −2.36 ± 0.47 S494 −4.09 ± 1.95 V445 −3.18 ± 0.59
N487 −2.09 ± 1.07 V445 −3.59 ± 1.50 Y505 −2.82 ± 0.97
F456 −1.99 ± 0.30 L455 −2.99 ± 0.37 F456 −2.76 ± 0.25
A475 −1.73 ± 0.94 F456 −2.46 ± 0.24 L455 −2.59 ± 0.59
S477 −1.72 ± 1.13 Y505 −2.12 ± 0.52 S494 −1.97 ± 0.29
V445 −1.58 ± 1.05 Y495 −1.99 ± 0.40 N487 −1.95 ± 0.91
Q498 −1.48 ± 0.39 G496 −1.66 ± 0.64 T501 −1.73 ± 1.52
Sum −31.0 −49.2 −39.3