Table 1.
Summary of raw reads after quality control and mapping to the reference genome.
| Sample | Raw Reads | Clean Reads | Clean ratio (%) | Q30 (%) | GC content (%) | Total mapped | Unique mappedc |
|---|---|---|---|---|---|---|---|
| D-PF-1 | 136,631,686 | 135,393,598 | 99.09 | 95.22 | 52.05 | 130,223,053 (96.18%) | 99,220,652 (73.28%) |
| D-PF-2 | 141,871,442 | 140,587,412 | 99.09 | 95.01 | 52.78 | 133,116,845 (94.69%) | 106,911,296 (76.05%) |
| D-PF-3 | 144,353,224 | 142,895,188 | 98.99 | 95.23 | 52.09 | 137,830,324 (96.46%) | 103,526,375 (72.45%) |
| X-PF-1 | 137,953,526 | 136,746,686 | 99.13 | 95.38 | 52.25 | 131,380,772 (96.08%) | 101,534,519 (74.25%) |
| X-PF-2 | 129,535,766 | 128,433,640 | 99.15 | 95.2 | 52.45 | 123,830,160 (96.42%) | 95,751,126 (74.55%) |
| X-PF-3 | 132,333,836 | 130,999,204 | 98.99 | 95.17 | 52.23 | 125,839,893 (96.06%) | 97,392,935 (74.35%) |