REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-Myosin Heavy Chain antibody, clone A4.1025 | Millipore | Cat#05–716; RRID:AB_309930 |
Anti-Tead1 (TEF-1 Pure) | BD Biosciences | Cat# 610922; RRID:AB_398237 |
Anti-IgG | Millipore | Cat# Magna 0014 |
Anti-APJ receptor antibody | Abcam | Cat# ab214369 |
Anti-Apelin antibody | Abcam | Cat# ab125213 RRID:AB_10999708 |
Anti-Laminin antibody | LS Bio | Cat# LS-C96142 RRID:AB_2033342 |
Anti-CD31 (Pecam1) antibody | BD Biosciences | Cat# 557355 RRID:AB_396660 |
Critical commercial assays | ||
One-Glo Firefly Luciferase Detection Kit | Promega | Cat# E8120 |
Nano-Glo Dual-Luciferase Detection Kit | Promega | Cat# N1620 |
Glo-lysis Buffer | Promega | Cat# E2661 |
Lipofectamine RNAiMax | Thermofisher | Cat# S-006-100 |
Apelin EIA kit | Phoenix pharmaceuticals | Cat# EK-057-23 |
Gibson assembly kit | NEB | Cat# E5510 |
FastLane cell multiplex NR kit | Qiagen | Cat# 216713 |
miRNeasy Mini Kit | Qiagen | Cat# 217004 |
Covaris truChIP chromatin shearing kit | Covaris | Cat# SKU:500465 |
Magna ChIP A/G kit | Millipore/Sigma | Cat#17–10085 |
Minielute DNA purification kit | Qiagen | Cat# 28004 |
Maxima Sybr Green/ROX master mix | Thermo Scientific | Cat# K0221 |
Chemicals, peptides, and recombinant proteins | ||
Recombinant Phy Apelin-13 | Bachem | Cat# U-01260 |
Cardiotoxin | Laxotan | Cat# L8102 |
Notexin | Laxotan | Cat# L8104 |
Deposited data | ||
GSE1133 | bioGPS | GeneAtlas UI33A (gcrma) for human samples |
GSE1133 | bioGPS | GeneAtlas MOE430 (gcrma) for mouse tissues |
GSE45577 | GEO | (Lukjanenko et al., 2013) https://doi.org/10.1371/journal.pone.0071084 |
GSE143435, GSE143437, GSE159500 | GEO | (McKellar et al., 2021) https://doi.org/10.1101/2020.12.01.407460 |
Experimental models: Cell lines | ||
C2C12 myoblast cell line | ATCC | Cat# CRL1772 RRID:CVCL_0188 |
C166 endothelial cell line | ATCC | Cat# CRL2581 RRID:CVCL_6581 |
EOMA endothelial cell line | ATCC | Cat# CRL2586 RRID:CVCL_3507 |
C166GFP endothelial cell line | ATCC | Cat# CRL2583 RRID:CVCL_6582 |
Experimental models: Organisms/strains | ||
C57BL/6J – 24month old | Jackson | Cat# 000664 RRID:IMSR_JAX:000664 |
Mck-Tead1 OE mice | (Southard et al., 2016) | |
Oligonucleotides | ||
si-RNA scramble pool | Dharmacon | Cat# D-001810-10–50 |
si-Tead1 pool | Dharmacon | Cat# L-048419-01–0005 |
si-Zdhhc9 pool | Dharmacon | Cat# L-058018-01–0005 |
si-Zfp319 pool | Dharmacon | Cat# L-059731-01–0005 |
Apln taqman probe | Life Technologies | Mm00443562_m1 |
Hprt taqman probe | Life Technologies | Mm00446968_m1 |
Tead1 taqman probe | Life Technologies | Mm00493507_m1 |
Barx1 taqman probe | Life Technologies | Mm01353100_m1 |
Zic3 taqman probe | Life Technologies | Mm00494362_m1 |
Zdhhc9 taqman probe | Life Technologies | Mm00552609_m1 |
Gcm2 taqman probe | Life Technologies | Mm00492312_m1 |
Pecam1 taqman probe | Life Technologies | Mm01242576_m1 |
Icam 1 taqman probe | Life Technologies | Mm00516023_m1 |
Tek (Tie2) taqman probe | Life Technologies | Mm00443243_m1 |
Recombinant DNA | ||
N/A | ||
Software and algorithms | ||
SnapGene | Snapgene | N/A |
metaXpress | Molecular Devices | N/A |
VS-ASW FL software | Nikon | N/A |
MetaXpress software | Molecular Devices | N/A |
NIS-Elements | Nikon | N/A |
GraphPad Prism Software | GraphPad | N/A |
ApE | ApE | version 7–9 |
Transcription factor-DNA interaction detection in yeast (TIDY) | (Hens et al., 2011) |
https://updeplasrv1.epfl.ch/software/ https://doi.org/10.1038/nmeth.1763 |
Other | ||
Seurat | (Butler et al., 2018) | version3.1.5 |
Harmony | (Korsunsky et al., 2019) | version 1.0 |