Table 3.
Summary of transcription factors exclusively targeting either the wild type (WT) or the mutant sequence (MUT) of SLC15A4 upstream region
| Transcription factor | Targeting | Matrix ID | Relative scorea | Start | End | Strand | Predicted sequence |
|---|---|---|---|---|---|---|---|
| MEIS2 | WT | MA0774.1 | 0.84 | 116 | 123 | + | gggacAGG |
| NR1D2 | WT | MA1532.1 | 0.81 | 108 | 122 | + | tgggttctgggacAG |
| RARA::RXRG | WT | MA1149.1 | 0.80 | 109 | 126 | + | gggttctgggacAGGTGA |
| RBPJ | WT | MA1116.1 | 0.86 | 113 | 122 | + | tctgggacAG |
| RORC | WT | MA1151.1 | 0.82 | 110 | 121 | + | ggttctgggacA |
| SREBF1 | WT | MA0595.1 | 0.80 | 118 | 127 | – | GTCACCTgtc |
| STAT1 | WT | MA0137.2 | 0.84 | 109 | 123 | – | CCTgtcccagaaccc |
| MA0137.3 | 0.88 | 111 | 121 | + | gttctgggacA | ||
| TGIF2LX | WT | MA1571.1 | 0.81 | 117 | 128 | – | GGTCACCTgtcc |
| 0.81 | 117 | 128 | + | ggacAGGTGACC | |||
| TGIF2LY | WT | MA1572.1 | 0.82 | 117 | 128 | – | GGTCACCTgtcc |
| 0.82 | 117 | 128 | + | ggacAGGTGACC | |||
| GRHL2 | MUT | MA1105.2 | 0.83 | 116 | 127 | + | ggaacAGGTGAC |
| MYF6 | MUT | MA0667.1 | 0.82 | 118 | 127 | + | aacAGGTGAC |
| NFATC2 | MUT | MA0152.1 | 0.90 | 115 | 121 | – | Tgttcca |
| PRDM4 | MUT | MA1647.1 | 0.81 | 114 | 124 | – | ACCTgttccag |
| SCRT1 | MUT | MA0743.1 | 0.83 | 114 | 128 | + | ctggaacAGGTGACC |
| MA0743.2 | 0.85 | 113 | 128 | + | tctggaacAGGTGACC | ||
| SCRT2 | MUT | MA0744.1 | 0.85 | 114 | 126 | + | ctggaacAGGTGA |
| MA0744.2 | 0.85 | 113 | 128 | + | tctggaacAGGTGACC | ||
| TEF | MUT | MA0843.1 | 0.80 | 110 | 121 | – | Tgttccagaacc |
| ZBTB26 | MUT | MA1579.1 | 0.92 | 107 | 121 | – | Tgttccagaacccag |
Respective transcription factor binding sites (TFBS) are identified with Jaspar2020 and the default relative profile score threshold of 80%. Matrix ID, relative scores, start and end positions, strand information as well as respective binding sequences are included
aA relative score of 1 is representing the maximum likelihood sequence for the motif