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. 2022 May 13;297(4):965–979. doi: 10.1007/s00438-022-01896-0

Table 3.

Summary of transcription factors exclusively targeting either the wild type (WT) or the mutant sequence (MUT) of SLC15A4 upstream region

Transcription factor Targeting Matrix ID Relative scorea Start End Strand Predicted sequence
MEIS2 WT MA0774.1 0.84 116 123 + gggacAGG
NR1D2 WT MA1532.1 0.81 108 122 + tgggttctgggacAG
RARA::RXRG WT MA1149.1 0.80 109 126 + gggttctgggacAGGTGA
RBPJ WT MA1116.1 0.86 113 122 + tctgggacAG
RORC WT MA1151.1 0.82 110 121 + ggttctgggacA
SREBF1 WT MA0595.1 0.80 118 127 GTCACCTgtc
STAT1 WT MA0137.2 0.84 109 123 CCTgtcccagaaccc
MA0137.3 0.88 111 121 + gttctgggacA
TGIF2LX WT MA1571.1 0.81 117 128 GGTCACCTgtcc
0.81 117 128 + ggacAGGTGACC
TGIF2LY WT MA1572.1 0.82 117 128 GGTCACCTgtcc
0.82 117 128 + ggacAGGTGACC
GRHL2 MUT MA1105.2 0.83 116 127 + ggaacAGGTGAC
MYF6 MUT MA0667.1 0.82 118 127 + aacAGGTGAC
NFATC2 MUT MA0152.1 0.90 115 121 Tgttcca
PRDM4 MUT MA1647.1 0.81 114 124 ACCTgttccag
SCRT1 MUT MA0743.1 0.83 114 128 + ctggaacAGGTGACC
MA0743.2 0.85 113 128 + tctggaacAGGTGACC
SCRT2 MUT MA0744.1 0.85 114 126 + ctggaacAGGTGA
MA0744.2 0.85 113 128 + tctggaacAGGTGACC
TEF MUT MA0843.1 0.80 110 121 Tgttccagaacc
ZBTB26 MUT MA1579.1 0.92 107 121 Tgttccagaacccag

Respective transcription factor binding sites (TFBS) are identified with Jaspar2020 and the default relative profile score threshold of 80%. Matrix ID, relative scores, start and end positions, strand information as well as respective binding sequences are included

aA relative score of 1 is representing the maximum likelihood sequence for the motif