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. Author manuscript; available in PMC: 2023 Jul 3.
Published in final edited form as: Stem Cell Res. 2022 Jan 3;59:102657. doi: 10.1016/j.scr.2022.102657

Table 1.

Characterization and validation.

Classification Test Result Data
Morphology Photography bright field Normal Fig. 1A
Phenotype Qualitative analysis: Immunofluorescence staining Positive expression of pluripotency markers: Oct3/4, Nanog, and Sox2 Fig. 1B
Quantitative analysis: RT-qPCR Positive expression of NANOG and SOX2 in iPSCs; negative in differentiated CMs Fig. 1D
Genotype Whole genome array (Karyostat Assay) Resolution 1–2 Mb Normal karyotype: 46, XY for SCVIi-039 and SCVIi-040, XX for SCVIi-041 Supplementary Fig. 1A
Identity Microsatellite PCR (mPCR) or STR analysis mPCR not performed N/A
16 loci tested with matching identity Supplementary Fig. 2A,B; Also submitted in archive with journal
Mutation analysis (IF APPLICABLE) Sequencing Heterozygous for all three lines Fig. 1F
Southern blot or WGS N/A N/A
Microbiology and virology Mycoplasma Luminescence: negative Supplementary Fig. 1B
Differentiation potential Trilineage in vitro differentiation Positive IF staining of the three germ layers Fig. 1C
List of recommended germ layer markers Expression of these markers has to be demonstrated at mRNA (RT-qPCR) or protein (IF) levels, at least 2 markers need to be shown per germ layer Ectoderm: Otx2, Pax6; Mesoderm: Brachyury, Tbx6; Endoderm: Sox17, Foxa2 Fig. 1C
Donor screening (OPTIONAL) HIV 1 + 2, Hepatitis B, Hepatitis C Not performed N/A
Genotype additional info (OPTIONAL) Blood group genotyping Not performed N/A
HLA tissue typing Not performed N/A