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pyPheWAS package tools. The package is composed of three main tool sets: data preparation, ICD analysis, and CPT analysis. Data preparation tools focus on preprocessing EMR data, e.g., case/control matching (maximizeControls) and censoring events (censor-Data). The ICD analysis tools run PheDAS on ICD code data, while the CPT analysis tools run PheDAS on CPT code data. The function and usage of all tools are described in the Methods section
