REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
PerCP-cy5.5 anti-human CD19 antibody | Biolegend | Cat# 363016, clone SJ25C1; RRID:AB_2564207 |
FITC anti-human CD3 antibody | Biolegend | Cat# 300306, clone HIT3a; RRID:AB_314042 |
anti-SARS-CoV-2 RBD mAb | Sino Biological | Cat# 40150-D004; RRID:AB_2827983 |
anti-SARS-CoV-2 nucleocapsid antibody | MyBioSource | Cat# MBS2563841 |
Bacterial and virus strains | ||
SARS-CoV-2 Wuhan (BetaCov/Belgium/GHB-03021/2020; EPI ISL 109 407976|2020-02-03) | Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 | PMID: 33037151 |
SARS-CoV-2 Beta B.1.351 (hCoV-19/Belgium/rega-1920/2021; EPI_ISL_896474, 2021-01-11) | Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 | PMID: 34049240 |
SARS-CoV-2 Delta B.1.617.2 (hCoV-19/Belgium/rega-7214/2021; EPI_ISL_2425097; 2021-04-20) | Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 | PMID: 35169114 |
Biological samples | ||
Human COVID-19 patient PBMCs | This paper | N/A |
Human COVID-19 patient serum | This paper | N/A |
Chemicals, peptides, and recombinant proteins | ||
PE streptavidin | Biolegend | Cat# 405203 |
Spike glycoprotein (S1) RBD-His | The Native Antigen Company | Cat# REC31849-500 |
RBD(N439K)-His | Sino Biological | Cat# 40592-V08H14 |
RBD(N501Y)-His | Sino Biological | Cat# 40592-V08H82 |
RBD(E484K)-His | Sino Biological | Cat# 40592-V08H84 |
RBD(Y453F)-His | Sino Biological | Cat# 40592-V08H80 |
RBD(E484Q)-His | Sino Biological | Cat# 40592-V08H81 |
RBD(L425R)-His | Sino Biological | Cat# 40592-V08H28 |
RBD(L425R,E484Q)-His | Sino Biological | Cat# 40592-V08H88 |
RBD(K417N, E484K, N501Y)-His | Sino Biological | Cat# 40592-V08H85 |
Spike Glycoprotein (Full-Length)-His | The Native Antigen Company | Cat# REC31868-500 |
Zombie Aqua Fixable Viability Kit | Biolegend | Cat# 423101 |
FcR blocking reagent | Miltenyi Biotec | Cat# 130-059-901 |
KAPA HiFi HotStart ReadyMix | Roche | Cat# 103568-586 |
Critical commercial assays | ||
EasySep™ Human B Cell Enrichment Kit | Stem Cell Technologies | Cat# 17954 |
EZ-Link Sulfo-NHS-LC-Biotin kit | Thermo Fisher | Cat# 21335 |
Agencourt AMPure XP beads | Beckman Coulter | Cat# A63880 |
NucleoBond Xtra Maxi EF kit | Machery - Nagel | Cat# 740424.50 |
Experimental models: Cell lines | ||
FreeStyle™ 293-F Cells | Thermo Fisher | Cat# R79007 |
HEK293T cells | ATCC | ATCC Cat# CRL-3216, RRID:CVCL_0063 |
Vero E6 cells | ATCC | ATCC Cat# CRL-1586 |
BHK-21J | https://doi.org/10.1128/JVI.71.12.96089617.1997 | N/A |
Experimental models: Organisms/strains | ||
Golden Syrian Hamsters (Mesocricetus auratus) | Janvier Laboratories | Strain name RjHan:AURA |
Oligonucleotides | ||
oligo-dT primer (5′–AAGCAGT GGTATCAACGCAGAGTACT30-3′) |
IDT DNA | N/A |
Forward primer (described by Picelli et al.) (5′-AAGCAGTGGT ATCAACGCAGAGT-3′) |
IDT DNA | N/A |
Reverse primer IgM variable region (described by Ozawa et al.) (5′-CCGACGGGGAA TTCTCACAG-3′) |
IDT DNA | N/A |
Reverse primer IgG variable region (described by Ozawa et al.) (5′-CGCCTGAGTTCC ACGACACC-3′) |
IDT DNA | N/A |
Reverse primer Kappa variable region (described by Ozawa et al.) (5′-GAGGCAGTTCCA GATTTCAA-3′) |
IDT DNA | N/A |
Reverse primer Lamda variable region (described by Ozawa et al.) (5′-GCTT GGAGCTCCTCAGAGG-3′) |
IDT DNA | N/A |
Recombinant DNA | ||
VSVΔG | https://doi.org/10.1016/j.jviromet.2010.08.006 | N/A |
D614G Spike variant | https://doi.org/10.1038/s41586-020-3035-9 | N/A |
Beta Spike variant | Invivogen | plv-spike-v3 |
Gamma Spike variant | Invivogen | plv-spike-v5 |
Delta Spike variant | Invivogen | plv-spike-v8 |
Omicron Spike variant | https://doi.org/10.1101/2021.11.12.468374 | N/A |
Software and algorithms | ||
GraphPad Prism | N/A | |
Biacore T200 Evaluation Software 3.1 | N/A | |
Thermo Fisher Scientific HCS Studio (v.6.6.0) software | N/A |