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. 2022 Jul 3;25(8):104705. doi: 10.1016/j.isci.2022.104705
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

PerCP-cy5.5 anti-human CD19 antibody Biolegend Cat# 363016, clone SJ25C1; RRID:AB_2564207
FITC anti-human CD3 antibody Biolegend Cat# 300306, clone HIT3a; RRID:AB_314042
anti-SARS-CoV-2 RBD mAb Sino Biological Cat# 40150-D004; RRID:AB_2827983
anti-SARS-CoV-2 nucleocapsid antibody MyBioSource Cat# MBS2563841

Bacterial and virus strains

SARS-CoV-2 Wuhan (BetaCov/Belgium/GHB-03021/2020; EPI ISL 109 407976|2020-02-03) Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 PMID: 33037151
SARS-CoV-2 Beta B.1.351 (hCoV-19/Belgium/rega-1920/2021; EPI_ISL_896474, 2021-01-11) Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 PMID: 34049240
SARS-CoV-2 Delta B.1.617.2 (hCoV-19/Belgium/rega-7214/2021; EPI_ISL_2425097; 2021-04-20) Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 PMID: 35169114

Biological samples

Human COVID-19 patient PBMCs This paper N/A
Human COVID-19 patient serum This paper N/A

Chemicals, peptides, and recombinant proteins

PE streptavidin Biolegend Cat# 405203
Spike glycoprotein (S1) RBD-His The Native Antigen Company Cat# REC31849-500
RBD(N439K)-His Sino Biological Cat# 40592-V08H14
RBD(N501Y)-His Sino Biological Cat# 40592-V08H82
RBD(E484K)-His Sino Biological Cat# 40592-V08H84
RBD(Y453F)-His Sino Biological Cat# 40592-V08H80
RBD(E484Q)-His Sino Biological Cat# 40592-V08H81
RBD(L425R)-His Sino Biological Cat# 40592-V08H28
RBD(L425R,E484Q)-His Sino Biological Cat# 40592-V08H88
RBD(K417N, E484K, N501Y)-His Sino Biological Cat# 40592-V08H85
Spike Glycoprotein (Full-Length)-His The Native Antigen Company Cat# REC31868-500
Zombie Aqua Fixable Viability Kit Biolegend Cat# 423101
FcR blocking reagent Miltenyi Biotec Cat# 130-059-901
KAPA HiFi HotStart ReadyMix Roche Cat# 103568-586

Critical commercial assays

EasySep™ Human B Cell Enrichment Kit Stem Cell Technologies Cat# 17954
EZ-Link Sulfo-NHS-LC-Biotin kit Thermo Fisher Cat# 21335
Agencourt AMPure XP beads Beckman Coulter Cat# A63880
NucleoBond Xtra Maxi EF kit Machery - Nagel Cat# 740424.50

Experimental models: Cell lines

FreeStyle™ 293-F Cells Thermo Fisher Cat# R79007
HEK293T cells ATCC ATCC Cat# CRL-3216, RRID:CVCL_0063
Vero E6 cells ATCC ATCC Cat# CRL-1586
BHK-21J https://doi.org/10.1128/JVI.71.12.96089617.1997 N/A

Experimental models: Organisms/strains

Golden Syrian Hamsters (Mesocricetus auratus) Janvier Laboratories Strain name RjHan:AURA

Oligonucleotides

oligo-dT primer (5′–AAGCAGT
GGTATCAACGCAGAGTACT30-3′)
IDT DNA N/A
Forward primer (described by Picelli et al.) (5′-AAGCAGTGGT
ATCAACGCAGAGT-3′)
IDT DNA N/A
Reverse primer IgM variable region (described by Ozawa et al.) (5′-CCGACGGGGAA
TTCTCACAG-3′)
IDT DNA N/A
Reverse primer IgG variable region (described by Ozawa et al.) (5′-CGCCTGAGTTCC
ACGACACC-3′)
IDT DNA N/A
Reverse primer Kappa variable region (described by Ozawa et al.) (5′-GAGGCAGTTCCA
GATTTCAA-3′)
IDT DNA N/A
Reverse primer Lamda variable region (described by Ozawa et al.) (5′-GCTT
GGAGCTCCTCAGAGG-3′)
IDT DNA N/A

Recombinant DNA

VSVΔG https://doi.org/10.1016/j.jviromet.2010.08.006 N/A
D614G Spike variant https://doi.org/10.1038/s41586-020-3035-9 N/A
Beta Spike variant Invivogen plv-spike-v3
Gamma Spike variant Invivogen plv-spike-v5
Delta Spike variant Invivogen plv-spike-v8
Omicron Spike variant https://doi.org/10.1101/2021.11.12.468374 N/A

Software and algorithms

GraphPad Prism N/A
Biacore T200 Evaluation Software 3.1 N/A
Thermo Fisher Scientific HCS Studio (v.6.6.0) software N/A