| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| PerCP-cy5.5 anti-human CD19 antibody | Biolegend | Cat# 363016, clone SJ25C1; RRID:AB_2564207 |
| FITC anti-human CD3 antibody | Biolegend | Cat# 300306, clone HIT3a; RRID:AB_314042 |
| anti-SARS-CoV-2 RBD mAb | Sino Biological | Cat# 40150-D004; RRID:AB_2827983 |
| anti-SARS-CoV-2 nucleocapsid antibody | MyBioSource | Cat# MBS2563841 |
| Bacterial and virus strains | ||
| SARS-CoV-2 Wuhan (BetaCov/Belgium/GHB-03021/2020; EPI ISL 109 407976|2020-02-03) | Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 | PMID: 33037151 |
| SARS-CoV-2 Beta B.1.351 (hCoV-19/Belgium/rega-1920/2021; EPI_ISL_896474, 2021-01-11) | Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 | PMID: 34049240 |
| SARS-CoV-2 Delta B.1.617.2 (hCoV-19/Belgium/rega-7214/2021; EPI_ISL_2425097; 2021-04-20) | Prof. Piet Maes; https://doi.org/10.1038/s41467-022-28354-0 | PMID: 35169114 |
| Biological samples | ||
| Human COVID-19 patient PBMCs | This paper | N/A |
| Human COVID-19 patient serum | This paper | N/A |
| Chemicals, peptides, and recombinant proteins | ||
| PE streptavidin | Biolegend | Cat# 405203 |
| Spike glycoprotein (S1) RBD-His | The Native Antigen Company | Cat# REC31849-500 |
| RBD(N439K)-His | Sino Biological | Cat# 40592-V08H14 |
| RBD(N501Y)-His | Sino Biological | Cat# 40592-V08H82 |
| RBD(E484K)-His | Sino Biological | Cat# 40592-V08H84 |
| RBD(Y453F)-His | Sino Biological | Cat# 40592-V08H80 |
| RBD(E484Q)-His | Sino Biological | Cat# 40592-V08H81 |
| RBD(L425R)-His | Sino Biological | Cat# 40592-V08H28 |
| RBD(L425R,E484Q)-His | Sino Biological | Cat# 40592-V08H88 |
| RBD(K417N, E484K, N501Y)-His | Sino Biological | Cat# 40592-V08H85 |
| Spike Glycoprotein (Full-Length)-His | The Native Antigen Company | Cat# REC31868-500 |
| Zombie Aqua Fixable Viability Kit | Biolegend | Cat# 423101 |
| FcR blocking reagent | Miltenyi Biotec | Cat# 130-059-901 |
| KAPA HiFi HotStart ReadyMix | Roche | Cat# 103568-586 |
| Critical commercial assays | ||
| EasySep™ Human B Cell Enrichment Kit | Stem Cell Technologies | Cat# 17954 |
| EZ-Link Sulfo-NHS-LC-Biotin kit | Thermo Fisher | Cat# 21335 |
| Agencourt AMPure XP beads | Beckman Coulter | Cat# A63880 |
| NucleoBond Xtra Maxi EF kit | Machery - Nagel | Cat# 740424.50 |
| Experimental models: Cell lines | ||
| FreeStyle™ 293-F Cells | Thermo Fisher | Cat# R79007 |
| HEK293T cells | ATCC | ATCC Cat# CRL-3216, RRID:CVCL_0063 |
| Vero E6 cells | ATCC | ATCC Cat# CRL-1586 |
| BHK-21J | https://doi.org/10.1128/JVI.71.12.96089617.1997 | N/A |
| Experimental models: Organisms/strains | ||
| Golden Syrian Hamsters (Mesocricetus auratus) | Janvier Laboratories | Strain name RjHan:AURA |
| Oligonucleotides | ||
| oligo-dT primer (5′–AAGCAGT GGTATCAACGCAGAGTACT30-3′) |
IDT DNA | N/A |
| Forward primer (described by Picelli et al.) (5′-AAGCAGTGGT ATCAACGCAGAGT-3′) |
IDT DNA | N/A |
| Reverse primer IgM variable region (described by Ozawa et al.) (5′-CCGACGGGGAA TTCTCACAG-3′) |
IDT DNA | N/A |
| Reverse primer IgG variable region (described by Ozawa et al.) (5′-CGCCTGAGTTCC ACGACACC-3′) |
IDT DNA | N/A |
| Reverse primer Kappa variable region (described by Ozawa et al.) (5′-GAGGCAGTTCCA GATTTCAA-3′) |
IDT DNA | N/A |
| Reverse primer Lamda variable region (described by Ozawa et al.) (5′-GCTT GGAGCTCCTCAGAGG-3′) |
IDT DNA | N/A |
| Recombinant DNA | ||
| VSVΔG | https://doi.org/10.1016/j.jviromet.2010.08.006 | N/A |
| D614G Spike variant | https://doi.org/10.1038/s41586-020-3035-9 | N/A |
| Beta Spike variant | Invivogen | plv-spike-v3 |
| Gamma Spike variant | Invivogen | plv-spike-v5 |
| Delta Spike variant | Invivogen | plv-spike-v8 |
| Omicron Spike variant | https://doi.org/10.1101/2021.11.12.468374 | N/A |
| Software and algorithms | ||
| GraphPad Prism | N/A | |
| Biacore T200 Evaluation Software 3.1 | N/A | |
| Thermo Fisher Scientific HCS Studio (v.6.6.0) software | N/A | |