Table 2. Numbers of DEGs identified in the four SARS-CoV-2 RNA-seq datasets using two computational approaches.
| Dataset | Method | No. of upregulated genes | No. of downregulated genes | Total No. of regulated genes |
|---|---|---|---|---|
| Zhou | Voom and quantile normalization | 740 | 747 | 1,487 |
| DESeq2 | 140 | 6,538 | 6,678 | |
| Lieberman | Voom and quantile normalization | 97 | 66 | 163 |
| DESeq2 | 337 | 826 | 1,163 | |
| Blanco-Melo | Voom and quantile normalization | 28 | 138 | 166 |
| DESeq2 | 314 | 416 | 730 | |
| Israelow | Voom and quantile normalization | 2 | 55 | 57 |
| DESeq2 | 144 | 6 | 150 |