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. 2022 May 19;22(3):e22. doi: 10.4110/in.2022.22.e22

Table 2. Numbers of DEGs identified in the four SARS-CoV-2 RNA-seq datasets using two computational approaches.

Dataset Method No. of upregulated genes No. of downregulated genes Total No. of regulated genes
Zhou Voom and quantile normalization 740 747 1,487
DESeq2 140 6,538 6,678
Lieberman Voom and quantile normalization 97 66 163
DESeq2 337 826 1,163
Blanco-Melo Voom and quantile normalization 28 138 166
DESeq2 314 416 730
Israelow Voom and quantile normalization 2 55 57
DESeq2 144 6 150