Table 4.
Proximity of nitrogen use efficiency (NUE) linked SNPs43 to nitrate transporters detected in present study.
| SNP related to NUE | Chromosome | SNP Position | Nearby nitrate transporters | Nitrate transporter Position | Distance (in Mb) |
|---|---|---|---|---|---|
| AX94950355 | 1A | 12918698 | TaNPF6-1A1 | 14519757 | 1.601059 |
| AX94815202 | 1A | 14468156 | TaNPF6-1A1 | 14519757 | 0.051601 |
| AX94665912 | 1B | 624080881 | TaSLAC-1B10 | 622365197 | 1.715684 |
| AX94923560 | 2A | 729858424 | TaCLC-2A2 | 740847366 | 10.988942 |
| AX94906008 | 2A | 737049474 | TaCLC-2A2 | 740847366 | 3.797892 |
| AX95162328 | 2A | 745066946 | TaCLC-2A2 | 740847366 | 4.21958 |
| AX94601746 | 2B | 745715147 | TaCLC-2B2 | 742813858 | 2.901289 |
| AX95203088 | 2B | 748700718 | TaCLC-2B2 | 742813858 | 5.88686 |
| AX95190948 | 2B | 752830609 | TaCLC-2B2 | 742813858 | 10.016751 |
| AX95189671 | 2D | 394797805 | TaNPF4-2D2, TaCLC-2D1 | 394118961 395130092 | 0.332287, 0.678844 |
| AX94829391 | 2D | 601212191 | TaCLC-2D2 | 608915455 | 7.703264 |
| AX95142803 | 2D | 601600533 | TaCLC-2D2 | 608915455 | 7.314922 |
| AX94799671 | 2D | 608756380 | TaCLC-2D2 | 608915455 | 0.159075 |
| AX95142189 | 2D | 609577225 | TaCLC-2D2 | 608915455 | 0.66177 |
| AX94786006 | 2D | 610277424 | TaCLC-2D2 | 608915455 | 1.361969 |
| AX95148777 | 2D | 641963392 | TaNPF5-2D1-TaNPF5-2D5 | 639677529–643761743 | 1.798351–2.285863 |
| AX95238274 | 3A | 429463868 | TaSLAC-3A4 | 421719078 | 7.74479 |
| AX94593608 | 3A | 671144035 | TaNPF2-3A1, TaNPF2-3A2 | 660436466 660507764 | 10.636271, 10.707569 |
| AX95237615 | 3B | 6378879 | TaSLAC-3B1 | 7598907 | 1.220028 |
| AX95259763 | 3B | 229302401 | TaSLAC-3B3 | 227663976 | 1.638425 |
| AX95136655 | 3B | 235865416 | TaSLAC-3B3 | 227663976 | 8.20144 |
| AX94723497 | 3B | 236511642 | TaSLAC-3B3, TaNPF3B1 | 227663976 | 8.847666 |
| AX94561045 | 3B | 642481079 | TaNPF5-3B3–TaNPF5-3B10, TaCLC-3B3 | 651425224–655435367 | 8.944145–12.954288 |
| AX94539428 | 3B | 657947249 | TaCLC-3B3, TaNPF5-3B3–TaNPF5-3B10, TaNPF-3B4, TaNPF-3B5 | 651425224–662795946 | 2.511882–6.522025 |
| AX94386613 | 3B | 658604225 | TaCLC-3B3, TaNPF5-3B3–TaNPF5-3B10, TaNPF-3B4, TaNPF-3B5 | 651425224–662795946 | 3.168858–7.179001 |
| AX94418180 | 3B | 659275308 | TaCLC-3B3, TaNPF5-3B3–TaNPF5-3B10, TaNPF-3B4, TaNPF-3B5 | 651425224–662795946 | 3.839941–7.850084 |
| AX94429243 | 3B | 659787974 | TaCLC-3B3, TaNPF5-3B3–TaNPF5-3B10, TaNPF-3B4, TaNPF-3B5 | 651425224–662795946 | 4.352607–8.36275 |
| AX94910184 | 3D | 352948426 | TaCLC-3D1, TaNRT2-3D1 | 355885478 356623041 | 2.937052, 3.674615 |
| AX94514369 | 4A | 544201715 | TaNPF4-4A1 | 533257983 | 10.943732 |
| AX94926692 | 4A | 544202284 | TaNPF4-4A1 | 533257983 | 10.944301 |
| AX94766675 | 4A | 575009572 | TaNPF8-4A6 | 575006132 | 0.00344 |
| AX94400142 | 4A | 581754986 | TaCLC-4A1, TaNPF2-4A1, TaNPF7-4A1, TaNPF8-4A7, TaNPF8-4A8 | 585431883–593113134 | 3.676897–11.358148 |
| AX94414780 | 4B | 25929732 | TaCLC-4B1, TaNPF2-4B1, TaNPF4B1 | 20278828–25842359 | 5.650904 |
| AX94478236 | 4B | 28716503 | TaCLC-4B1, TaNPF2-4B1, TaNPF4B1 | 20278828–25842359 | 2.874144–8.437675 |
| AX94997694 | 4B | 34789538 | TaCLC-4B1, TaNPF2-4B1, TaNPF4B1 | 20278828–25842359 | 8.947179–14.51071 |
| AX94517352 | 4D | 21886662 | TaCLC-4D1, TaNPF2-4D1, TaNPF8-4D1 | 10764927–15356868 | 6.529794–11.121735 |
| AX94586364 | 4D | 22947854 | TaCLC-4D1, TaNPF2-4D1, TaNPF8-4D1 | 10764927–15356868 | 7.590986–12.182927 |
| AX94914919 | 4D | 28974006 | TaNPF8-4D2 | 28481269 | 0.492737 |
| AX94738199 | 5D | 10899555 | TaNPF2-5D1 | 6820550 | 4.079005 |
| AX95110067 | 5D | 467774783 | TaNPF4-5D3 | 464415850 | 3.358933 |
| AX95002541 | 5D | 468689841 | TaNPF4-5D3 | 464415850 | 4.273991 |
| AX95132327 | 5D | 472234562 | TaNPF4-5D3 | 464415850 | 7.818712 |
| AX94631745 | 5D | 528728651 | TaNPF5-5D1—TaNPF5-5D3 | 528294425–528587054 | 0.141597–0.43423 |
| AX94803288 | 6A | 14353974 | TaNRT2-6A1- TaNRT2-6A13 | 15727844–16408185 | 1.37387–2.054211 |
| AX95017906 | 6A | 23433182 | TaNRT2-6A14 | 21634811 | 1.798371 |
| AX94983341 | 6A | 28412753 | TaNRT2-6A14 | 21634811 | 6.777942 |
| AX95210745 | 6A | 29967076 | TaNRT2-6A14 | 21634811 | 8.332265 |
| AX94510892 | 6A | 112585030 | TaNPF8-6A1 | 117412062 | 4.827032 |
| AX94534539 | 6A | 497462168 | TaNPF7-6A1 | 486547388 | 10.91478 |
| AX94573487 | 6D | 27978202 | TaNPF5-6D1 | 22172543 | 5.805659 |
| AX94415776 | 6D | 28700804 | TaNPF5-6D1 | 22172543 | 6.528261 |
| AX94978974 | 6D | 29876083 | TaNPF5-6D1 | 22172543 | 7.70354 |
| AX94737868 | 6D | 29876631 | TaNPF5-6D1 | 22172543 | 7.704088 |
| AX95250225 | 6D | 29928065 | TaNPF5-6D1 | 22172543 | 7.755522 |
| AX94461279 | 6D | 451183032 | TaNPF8-6D2 | 449226044 | 1.956988 |
| AX94665619 | 7A | 222939896 | TaCLC-7A1 | 216343576 | 6.59632 |
| AX94566038 | 7A | 683488235 | TaNPF5-7A3 | 692626752 | 9.138517 |
| AX95178548 | 7B | 112337703 | TaNPF5-7B2 | 116046396 | 3.708693 |
| AX94532247 | 7B | 524619772 | TaNPF8-7B1- TaNPF8-7B3 | 517623485–518338133 | 6.281639–6.996287 |
| AX94424632 | 7B | 562740463 | TaNPF8-7B4–TaNPF8-7B6 | 556686657- 558639959 | 4.100504–6.053806 |
| AX94880654 | 7B | 592345313 | TaNRT2-7B1 | 583923053 | 8.42226 |
| AX94553632 | 7B | 633318727 | TaNPF5-7B4 | 624468356 | 8.850371 |
| AX94781629 | 7D | 206695834 | TaCLC-7D1 | 204246408 | 2.449426 |
| AX94678472 | 7D | 487753483 | TaNPF8-7D2–TaNPF8-7D4 | 489153269–489673028 | 1.39978- 1.91954 |
| AX95080011 | 7D | 592191388 | TaNPF5-7D4 | 600836846 | 8.645458 |