TABLE 1.
Putative TFs of NRL expression revealed by SCENIC pipeline
| TF | gene | highConfAnnot | nMotifs | bestMotif | NES | motifDb | coexModule | spearCor | CoexWeight |
|---|---|---|---|---|---|---|---|---|---|
| JUNB | NRL | TRUE | 80 | transfac_pro__M08921 | 5.28 | 10 kb | top3sd | 0.329302 | 0.00903612 |
| FOS | NRL | TRUE | 33 | dbcorrdb__FOS__ENCSR000EYZ_1__m1 | 3.3 | 10 kb | w0.005 | 0.30167 | 0.00976795 |
| CRX | NRL | TRUE | 8 | taipale_cyt_meth__CRX_NTAATCCN_FL | 4.81 | 10 kb | top1sd | 0.273863 | 0.00836799 |
| RARA | NRL | TRUE | 4 | taipale_cyt_meth__RARA_NRGGTCANNRGGTCAN_eDBD | 3.1 | 10 kb | top1sd | 0.267143 | 0.00220093 |
| FOXO3 | NRL | TRUE | 33 | hocomoco__FOXO3_MOUSE.H11MO.0.B | 4.15 | 10 kb | w0.005Andtop50 | 0.262975 | 0.00536981 |
| ATF4 | NRL | FALSE | 1 | yetfasco__YER045C_8 | 3.06 | 10 kb | top50perTarget | 0.184148 | 0.00458646 |
| BCLAF1 | NRL | FALSE | 4 | hocomoco__GABPA_HUMAN.H11MO.0.A | 4.09 | 10 kb | w0.001 | 0.215361 | 0.00136625 |
| EZH2 | NRL | FALSE | 1 | dbcorrdb__YY1__ENCSR000BKJ_1__m1 | 3.06 | 10 kb | w0.001 | 0.237286 | 0.00162493 |
| KDM5B | NRL | FALSE | 2 | dbcorrdb__YY1__ENCSR000BKU_1__m1 | 4.1 | 10 kb | top1sd | 0.24938 | 0.00458371 |
| NEUROD1 | NRL | FALSE | 1 | taipale_cyt_meth__ATOH7_ANCATATGNY_eDBD | 3.07 | 10 kb | top3sd | 0.380296 | 0.02625804 |
| RAD21 | NRL | FALSE | 5 | dbcorrdb__POLR3G__ENCSR000EHQ_1__m4 | 3.2 | 10 kb | top1sd | 0.25129 | 0.00459551 |
| SREBF1 | NRL | FALSE | 1 | dbcorrdb__SP1__ENCSR000BKO_1__m1 | 3.16 | 500 bp | w0.001 | 0.275158 | 0.00335473 |