Table 1.
The top 20 differentially methylated mRNAs based on log2(FC).
| Gene name | Chromosome | Peak start | Peak end | p-value | Log2(FC) | Regulation | Methylated region |
|---|---|---|---|---|---|---|---|
| GYS1 | chr19 | 49471387 | 49496567 | 2.55E-03 | 3.16 | Hyper | Exon |
| DLG3 | chrX | 69672155 | 69725337 | 3.47E-02 | 2.50 | Hyper | Exon, Intron |
| BTN3A3 | chr6 | 26440784 | 26452145 | 6.90E-03 | 2.49 | Hyper | Intron |
| PUM1 | chr1 | 31404353 | 31538551 | 5.38E-03 | 2.47 | Hyper | Exon, Intron |
| RPL13 | chr16 | 89627119 | 89630950 | 3.32E-02 | 2.47 | Hyper | Exon |
| LOX | chr5 | 121398890 | 121413980 | 1.24E-02 | 2.41 | Hyper | Exon |
| HIRIP3 | chr16 | 30004311 | 30006964 | 2.72E-02 | 2.38 | Hyper | Exon, Intron |
| PEX14 | chr1 | 10534944 | 10690815 | 1.99E-02 | 2.36 | Hyper | Exon, Intron |
| IL5RA | chr3 | 3133488 | 3151664 | 3.84E-02 | 2.36 | Hyper | Exon, Intron |
| RBM4B | chr11 | 66432766 | 66445295 | 1.27E-03 | 2.31 | Hyper | Exon, Intron |
| RP11-872D17.8 | chr11 | 57154260 | 57158130 | 8.04E-03 | 0.66 | hypo | Exon, Intron |
| KRT222 | chr17 | 38811872 | 38821393 | 2.16E-02 | 0.66 | hypo | Exon, Intron |
| INTS6 | chr13 | 51939364 | 51995510 | 2.93E-02 | 0.66 | hypo | Exon, Intron |
| UGT1A6 | chr2 | 234601512 | 234681946 | 3.18E-02 | 0.64 | hypo | Exon, Intron |
| TMIGD3 | chr1 | 112026191 | 112106556 | 2.28E-02 | 0.64 | hypo | Exon, Intron |
| HDX | chrX | 83572886 | 83757461 | 2.58E-02 | 0.64 | hypo | Exon, Intron |
| MDM4 | chr1 | 204485507 | 204527247 | 4.76E-04 | 0.63 | hypo | Exon, Intron |
| MORF4L2 | chrX | 102930428 | 102941746 | 5.72E-03 | 0.63 | hypo | Exon |
| AQP3 | chr9 | 33441806 | 33447551 | 3.44E-02 | 0.63 | hypo | Exon |
| PPP1R3F | chrX | 49126333 | 49143632 | 4.39E-02 | 0.63 | hypo | Exon, Intron |